Literature DB >> 27375926

Particle streak velocimetry-optical coherence tomography: a novel method for multidimensional imaging of microscale fluid flows.

Kevin C Zhou1, Brendan K Huang2, Ute A Gamm3, Vineet Bhandari4, Mustafa K Khokha5, Michael A Choma6.   

Abstract

We present a new OCT method for flow speed quantification and directional velocimetry: particle streak velocimetry-OCT (PSV-OCT). PSV-OCT generates two-dimensional, 2.5-vector component (vx ,|vy |,vz ) maps of microscale flow velocity fields. Knowledge of 2.5-vector components also enables the estimation of total flow speed. The enabling insight behind PSV-OCT is that tracer particles in sparsely-seeded fluid flow trace out streaks in (x,z,t)-space. The streak orientations in x-t and z-t yield vx and vz , respectively. The in-plane (x-z plane) residence time yields the out-of-plane speed |vy |. Vector component values are generated by fitting streaks to a model of image formation that incorporates equations of motion in 3D space. We demonstrate cross-sectional estimation of (vx ,|vy |,vz ) in two important animal models in ciliary biology: Xenopus embryos (tadpoles) and mouse trachea.

Entities:  

Keywords:  (110.4153) Motion estimation and optical flow; (110.4500) Optical coherence tomography; (120.7250) Velocimetry; (170.3880) Medical and biological imaging; (280.2490) Flow diagnostics

Year:  2016        PMID: 27375926      PMCID: PMC4929663          DOI: 10.1364/BOE.7.001590

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  29 in total

1.  Micro-anatomical and functional assessment of ciliated epithelium in mouse trachea using optical coherence phase microscopy.

Authors:  Rehman Ansari; Christian Buj; Mario Pieper; Peter König; Achim Schweikard; Gereon Hüttmann
Journal:  Opt Express       Date:  2015-09-07       Impact factor: 3.894

2.  Quantification of a three-dimensional velocity vector using spectral-domain Doppler optical coherence tomography.

Authors:  Yeh-Chan Ahn; Woonggyu Jung; Zhongping Chen
Journal:  Opt Lett       Date:  2007-06-01       Impact factor: 3.776

3.  In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography.

Authors:  J A Izatt; M D Kulkarni; S Yazdanfar; J K Barton; A J Welch
Journal:  Opt Lett       Date:  1997-09-15       Impact factor: 3.776

Review 4.  Optical coherence tomography today: speed, contrast, and multimodality.

Authors:  Wolfgang Drexler; Mengyang Liu; Abhishek Kumar; Tschackad Kamali; Angelika Unterhuber; Rainer A Leitgeb
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

5.  Improved velocimetry in optical coherence tomography using Bayesian analysis.

Authors:  Kevin C Zhou; Brendan K Huang; Hemant Tagare; Michael A Choma
Journal:  Biomed Opt Express       Date:  2015-11-12       Impact factor: 3.732

Review 6.  Understanding ciliated epithelia: the power of Xenopus.

Authors:  M E Werner; B J Mitchell
Journal:  Genesis       Date:  2011-12-27       Impact factor: 2.487

7.  Measurement of absolute blood flow velocity in outflow tract of HH18 chicken embryo based on 4D reconstruction using spectral domain optical coherence tomography.

Authors:  Zhenhe Ma; Aiping Liu; Xin Yin; Aaron Troyer; Kent Thornburg; Ruikang K Wang; Sandra Rugonyi
Journal:  Biomed Opt Express       Date:  2010-09-08       Impact factor: 3.732

8.  Fully distributed absolute blood flow velocity measurement for middle cerebral arteries using Doppler optical coherence tomography.

Authors:  Li Qi; Jiang Zhu; Aneeka M Hancock; Cuixia Dai; Xuping Zhang; Ron D Frostig; Zhongping Chen
Journal:  Biomed Opt Express       Date:  2016-01-20       Impact factor: 3.732

9.  Total retinal blood flow measurement by three beam Doppler optical coherence tomography.

Authors:  Richard Haindl; Wolfgang Trasischker; Andreas Wartak; Bernhard Baumann; Michael Pircher; Christoph K Hitzenberger
Journal:  Biomed Opt Express       Date:  2016-01-06       Impact factor: 3.732

10.  Microfluidic characterization of cilia-driven fluid flow using optical coherence tomography-based particle tracking velocimetry.

Authors:  Stephan Jonas; Dipankan Bhattacharya; Mustafa K Khokha; Michael A Choma
Journal:  Biomed Opt Express       Date:  2011-06-22       Impact factor: 3.732

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  10 in total

1.  Flexible, high-resolution micro-optical coherence tomography endobronchial probe toward in vivo imaging of cilia.

Authors:  Dongyao Cui; Kengyeh K Chu; Biwei Yin; Timothy N Ford; Chulho Hyun; Hui Min Leung; Joseph A Gardecki; George M Solomon; Susan E Birket; Linbo Liu; Steven M Rowe; Guillermo J Tearney
Journal:  Opt Lett       Date:  2017-02-15       Impact factor: 3.776

2.  Gaussian process post-processing for particle tracking velocimetry.

Authors:  Tommy Tang; Engin Deniz; Mustafa K Khokha; Hemant D Tagare
Journal:  Biomed Opt Express       Date:  2019-06-07       Impact factor: 3.732

3.  Ultrahigh-speed, phase-sensitive full-field interferometric confocal microscopy for quantitative microscale physiology.

Authors:  Ikbal Sencan; Brendan K Huang; Yong Bian; Emily Mis; Mustafa K Khokha; Hui Cao; Michael Choma
Journal:  Biomed Opt Express       Date:  2016-10-20       Impact factor: 3.732

4.  In vivo imaging of airway cilia and mucus clearance with micro-optical coherence tomography.

Authors:  Kengyeh K Chu; Carolin Unglert; Tim N Ford; Dongyao Cui; Robert W Carruth; Kanwarpal Singh; Linbo Liu; Susan E Birket; George M Solomon; Steven M Rowe; Guillermo J Tearney
Journal:  Biomed Opt Express       Date:  2016-06-02       Impact factor: 3.732

Review 5.  What we can learn from a tadpole about ciliopathies and airway diseases: Using systems biology in Xenopus to study cilia and mucociliary epithelia.

Authors:  Peter Walentek; Ian K Quigley
Journal:  Genesis       Date:  2017-01       Impact factor: 2.487

6.  Adaptable pulsatile flow generated from stem cell-derived cardiomyocytes using quantitative imaging-based signal transduction.

Authors:  Tongcheng Qian; Daniel A Gil; Emmanuel Contreras Guzman; Benjamin D Gastfriend; Kelsey E Tweed; Sean P Palecek; Melissa C Skala
Journal:  Lab Chip       Date:  2020-09-07       Impact factor: 6.799

7.  In vivo three-dimensional tracking of sperm behaviors in the mouse oviduct.

Authors:  Shang Wang; Irina V Larina
Journal:  Development       Date:  2018-03-19       Impact factor: 6.868

8.  Assessment of ciliary phenotype in primary ciliary dyskinesia by micro-optical coherence tomography.

Authors:  George M Solomon; Richard Francis; Kengyeh K Chu; Susan E Birket; George Gabriel; John E Trombley; Kristi L Lemke; Nikolai Klena; Brett Turner; Guillermo J Tearney; Cecilia W Lo; Steven M Rowe
Journal:  JCI Insight       Date:  2017-03-09

9.  Intranasal micro-optical coherence tomography imaging for cystic fibrosis studies.

Authors:  Hui Min Leung; Susan E Birket; Chulho Hyun; Timothy N Ford; Dongyao Cui; George M Solomon; Ren-Jay Shei; Adegboyega Timothy Adewale; Andrew R Lenzie; Courtney M Fernandez-Petty; Hui Zheng; Justin H Palermo; Do-Yeon Cho; Bradford A Woodworth; Lael M Yonker; Bryan P Hurley; Steven M Rowe; Guillermo J Tearney
Journal:  Sci Transl Med       Date:  2019-08-07       Impact factor: 17.956

10.  Real-time Functional Analysis of Inertial Microfluidic Devices via Spectral Domain Optical Coherence Tomography.

Authors:  Biqin Dong; Siyu Chen; Fan Zhou; Christina H Y Chan; Ji Yi; Hao F Zhang; Cheng Sun
Journal:  Sci Rep       Date:  2016-09-13       Impact factor: 4.379

  10 in total

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