| Literature DB >> 27375869 |
Mouhamadou Birame Diop1, Libasse Diop1, Thierry Maris2.
Abstract
The title salts, C4H7N2 (+)·NO3 (-)·C4H6N2, (I), and C4H7N2 (+)·NO3 (-), (II), were obtained from solutions containing 2-methyl-imidazole and nitric acid in different concentrations. In the crystal structure of salt (I), one of the -NH H atoms of the imidazole ring shows half-occupancy, hence only every second mol-ecule is in its cationic form. The nitrate anion in this structure lies on a twofold rotation axis. The neutral 2-methyl-imidazole mol-ecule and the 2-methyl-1H-imidazol-3-ium cation inter-act through N-H⋯N hydrogen bonds to form [(C4H6N2)⋯(C4H7N2)(+)] pairs. These pairs are linked with two nitrate anions on both sides through bifurcated N-H⋯(O,O) hydrogen bonds into chains running parallel to [001]. In the crystal structure of salt (II), the C4H7N2 (+) cation and the NO3 (-) anion are both located on a mirror plane, leading to a statistical disorder of the methyl H atoms. The cations and anions again inter-act through bifurcated N-H⋯(O,O) hydrogen bonds, giving rise to the formation of chains consisting of alternating anions and cations parallel to [100].Entities:
Keywords: 2-methyl-1H-imidazol-3-ium cations; bifurcated hydrogen bonds; chain structure; crystal structure
Year: 2016 PMID: 27375869 PMCID: PMC4910320 DOI: 10.1107/S2056989016003789
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular components of salt (I), showing the atom labelling and displacement ellipsoids drawn at the 50% probability level. H atoms are drawn as spheres of arbitrary radius and hydrogen bonds are shown as dashed lines. [Symmetry codes: (i) 1 − x, y, − z, (ii): 1 − x, y, − z.]
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O1i | 0.845 (19) | 2.594 (19) | 3.1837 (14) | 127.9 (15) |
| N2—H2⋯O2 | 0.845 (19) | 2.06 (2) | 2.9031 (10) | 172.5 (18) |
| N1—H1⋯N1ii | 0.83 (3) | 1.86 (3) | 2.678 (2) | 173 (4) |
Symmetry codes: (i) ; (ii) .
Figure 2The molecular components of salt (II), showing the atom labelling and displacement ellipsoids drawn at the 50% probability level. H atoms are drawn as spheres of arbitrary radius and hydrogen bonds are shown as dashed lines.
Figure 3Partial view of the packing in the crystal structure of (I), showing a chain of hydrogen-bonded molecules. Only one of the statistically disordered H-atom positions between the imidazole rings is shown.
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1i | 0.82 (4) | 2.12 (4) | 2.894 (2) | 157 (4) |
| N1—H1⋯O3i | 0.82 (4) | 2.41 (4) | 3.125 (3) | 147 (4) |
| N2—H2⋯O1 | 0.94 (3) | 1.83 (3) | 2.760 (2) | 167 (3) |
| N2—H2⋯O2 | 0.94 (3) | 2.50 (3) | 3.231 (2) | 135 (2) |
Symmetry code: (i) .
Figure 4Partial view of the packing in the crystal structure of (II), showing a chain made up of hydrogen-bonded nitrate anions and 2-methyl-1H-imidazol-3-ium cations.
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C4H6N2 +·NO3 −·C4H7N2 | C4H7N2+·NO3 − |
|
| 227.23 | 145.13 |
| Crystal system, space group | Monoclinic, | Orthorhombic, |
| Temperature (K) | 100 | 110 |
|
| 10.1879 (4), 10.0912 (4), 11.9055 (5) | 14.1402 (11), 6.2297 (5), 7.4571 (6) |
| α, β, γ (°) | 90, 115.188 (2), 90 | 90, 90, 90 |
|
| 1107.60 (8) | 656.89 (9) |
|
| 4 | 4 |
| Radiation type | Ga | Ga |
| μ (mm−1) | 0.58 | 0.70 |
| Crystal size (mm) | 0.25 × 0.19 × 0.19 | 0.09 × 0.04 × 0.03 |
| Data collection | ||
| Diffractometer | Bruker Venture Metaljet | Bruker Venture Metaljet |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.682, 0.752 | 0.471, 0.752 |
| No. of measured, independent and observed [ | 8771, 1286, 1210 | 13253, 817, 761 |
|
| 0.033 | 0.060 |
| (sin θ/λ)max (Å−1) | 0.650 | 0.651 |
| Refinement | ||
|
| 0.034, 0.100, 1.04 | 0.049, 0.146, 1.04 |
| No. of reflections | 1286 | 817 |
| No. of parameters | 102 | 68 |
| H-atom treatment | All H-atom parameters refined | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.20 | 0.22, −0.28 |
Computer programs: APEX2 and, SAINT (Bruker, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸), Mercury (Macrae et al., 2008 ▸), and publCIF (Westrip, 2010 ▸).
| C4H6N2+·NO3−·C4H7N2 | |
| Monoclinic, | Ga |
| Cell parameters from 6125 reflections | |
| θ = 5.7–60.7° | |
| µ = 0.58 mm−1 | |
| β = 115.188 (2)° | |
| Block, clear light colourless | |
| 0.25 × 0.19 × 0.19 mm |
| Bruker Venture Metaljet diffractometer | 1286 independent reflections |
| Radiation source: Metal Jet, Gallium Liquid Metal Jet Source | 1210 reflections with |
| Helios MX Mirror Optics monochromator | |
| Detector resolution: 10.24 pixels mm-1 | θmax = 60.7°, θmin = 5.7° |
| ω and φ scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 8771 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max < 0.001 | |
| 1286 reflections | Δρmax = 0.25 e Å−3 |
| 102 parameters | Δρmin = −0.20 e Å−3 |
| 0 restraints |
| Experimental. X-ray crystallographic data for I were collected from a single crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Venture diffractometer equipped with a Photon 100 CMOS Detector, a Helios MX optics and a Kappa goniometer. The crystal-to-detector distance was 4.0 cm, and the data collection was carried out in 1024 x 1024 pixel mode. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| N1 | 0.56964 (11) | 0.62468 (10) | 0.37404 (10) | 0.0219 (3) | |
| H1 | 0.533 (4) | 0.626 (3) | 0.297 (3) | 0.034 (9)* | 0.5 |
| N2 | 0.59828 (11) | 0.65353 (10) | 0.56421 (9) | 0.0198 (2) | |
| C1 | 0.37127 (14) | 0.74799 (14) | 0.39888 (12) | 0.0265 (3) | |
| H1A | 0.386 (2) | 0.837 (2) | 0.3796 (19) | 0.053 (6)* | |
| H1B | 0.303 (2) | 0.713 (2) | 0.3230 (19) | 0.049 (5)* | |
| H1C | 0.333 (2) | 0.741 (2) | 0.454 (2) | 0.058 (6)* | |
| C2 | 0.51030 (12) | 0.67449 (11) | 0.44456 (10) | 0.0189 (3) | |
| H2 | 0.578 (2) | 0.6791 (19) | 0.6223 (17) | 0.036 (4)* | |
| C3 | 0.70215 (14) | 0.57154 (12) | 0.45264 (12) | 0.0251 (3) | |
| H3 | 0.766 (2) | 0.5300 (18) | 0.4208 (15) | 0.037 (4)* | |
| C4 | 0.72067 (13) | 0.58907 (12) | 0.57091 (12) | 0.0238 (3) | |
| H4 | 0.802 (2) | 0.5656 (17) | 0.6485 (16) | 0.034 (4)* | |
| O1 | 0.45994 (10) | 0.92001 (9) | 0.82112 (8) | 0.0274 (2) | |
| O2 | 0.5000 | 0.73329 (12) | 0.7500 | 0.0229 (3) | |
| N3 | 0.5000 | 0.85988 (14) | 0.7500 | 0.0194 (3) |
| N1 | 0.0253 (5) | 0.0217 (5) | 0.0215 (5) | 0.0005 (4) | 0.0127 (4) | 0.0000 (4) |
| N2 | 0.0216 (5) | 0.0213 (5) | 0.0177 (5) | 0.0016 (4) | 0.0094 (4) | 0.0007 (4) |
| C1 | 0.0218 (6) | 0.0317 (7) | 0.0260 (6) | 0.0055 (5) | 0.0100 (5) | 0.0035 (5) |
| C2 | 0.0198 (5) | 0.0183 (5) | 0.0196 (5) | −0.0012 (4) | 0.0094 (4) | 0.0005 (4) |
| C3 | 0.0253 (6) | 0.0228 (6) | 0.0315 (6) | 0.0045 (5) | 0.0164 (5) | 0.0010 (5) |
| C4 | 0.0216 (6) | 0.0215 (6) | 0.0269 (6) | 0.0036 (4) | 0.0089 (5) | 0.0029 (4) |
| O1 | 0.0335 (5) | 0.0278 (5) | 0.0261 (5) | 0.0028 (4) | 0.0176 (4) | −0.0026 (3) |
| O2 | 0.0258 (6) | 0.0211 (6) | 0.0238 (6) | 0.000 | 0.0123 (5) | 0.000 |
| N3 | 0.0164 (6) | 0.0234 (7) | 0.0170 (6) | 0.000 | 0.0056 (5) | 0.000 |
| N1—H1 | 0.83 (3) | C1—H1C | 0.90 (2) |
| N1—C2 | 1.3247 (15) | C1—C2 | 1.4821 (16) |
| N1—C3 | 1.3822 (17) | C3—H3 | 0.974 (19) |
| N2—C2 | 1.3381 (15) | C3—C4 | 1.3504 (18) |
| N2—H2 | 0.845 (19) | C4—H4 | 0.971 (18) |
| N2—C4 | 1.3783 (16) | O1—N3 | 1.2433 (11) |
| C1—H1A | 0.95 (2) | O2—N3 | 1.2774 (19) |
| C1—H1B | 0.94 (2) | N3—O1i | 1.2433 (11) |
| C2—N1—H1 | 125 (3) | N1—C2—N2 | 109.58 (10) |
| C2—N1—C3 | 107.21 (10) | N1—C2—C1 | 125.45 (11) |
| C3—N1—H1 | 128 (3) | N2—C2—C1 | 124.91 (11) |
| C2—N2—H2 | 122.4 (13) | N1—C3—H3 | 121.6 (10) |
| C2—N2—C4 | 108.41 (10) | C4—C3—N1 | 108.53 (11) |
| C4—N2—H2 | 129.1 (13) | C4—C3—H3 | 129.9 (10) |
| H1A—C1—H1B | 104.5 (17) | N2—C4—H4 | 123.6 (10) |
| H1A—C1—H1C | 114.3 (18) | C3—C4—N2 | 106.26 (11) |
| H1B—C1—H1C | 107.4 (19) | C3—C4—H4 | 130.1 (10) |
| C2—C1—H1A | 109.7 (13) | O1—N3—O1i | 121.58 (14) |
| C2—C1—H1B | 111.1 (12) | O1i—N3—O2 | 119.21 (7) |
| C2—C1—H1C | 109.7 (14) | O1—N3—O2 | 119.21 (7) |
| N1—C3—C4—N2 | −0.02 (14) | C3—N1—C2—C1 | 176.33 (12) |
| C2—N1—C3—C4 | 0.57 (14) | C4—N2—C2—N1 | 0.92 (13) |
| C2—N2—C4—C3 | −0.53 (14) | C4—N2—C2—C1 | −176.35 (11) |
| C3—N1—C2—N2 | −0.91 (13) |
| H··· | ||||
| N2—H2···O1i | 0.845 (19) | 2.594 (19) | 3.1837 (14) | 127.9 (15) |
| N2—H2···O2 | 0.845 (19) | 2.06 (2) | 2.9031 (10) | 172.5 (18) |
| N1—H1···N1ii | 0.83 (3) | 1.86 (3) | 2.678 (2) | 173 (4) |
| C4H7N2+·NO3− | |
| Ga | |
| Orthorhombic, | Cell parameters from 9976 reflections |
| θ = 5.2–60.7° | |
| µ = 0.70 mm−1 | |
| Block, clear light colorless | |
| 0.09 × 0.04 × 0.03 mm | |
| Bruker Venture Metaljet diffractometer | 817 independent reflections |
| Radiation source: Metal Jet, Gallium Liquid Metal Jet Source | 761 reflections with |
| Helios MX Mirror Optics monochromator | |
| Detector resolution: 10.24 pixels mm-1 | θmax = 60.8°, θmin = 8.1° |
| ω and φ scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 13253 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 817 reflections | Δρmax = 0.22 e Å−3 |
| 68 parameters | Δρmin = −0.28 e Å−3 |
| Experimental. X-ray crystallographic data for I were collected from a single crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Venture diffractometer equipped with a Photon 100 CMOS Detector, a Helios MX optics and a Kappa goniometer. The crystal-to-detector distance was 4.0 cm, and the data collection was carried out in 1024 x 1024 pixel mode. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| N1 | 0.75103 (14) | 0.2500 | 0.7473 (3) | 0.0489 (5) | |
| H1 | 0.791 (3) | 0.2500 | 0.828 (5) | 0.104 (14)* | |
| N2 | 0.62239 (12) | 0.2500 | 0.5968 (2) | 0.0383 (5) | |
| H2 | 0.558 (2) | 0.2500 | 0.566 (4) | 0.065 (9)* | |
| C1 | 0.6012 (2) | 0.2500 | 0.9290 (3) | 0.0581 (7) | |
| H1A | 0.6415 | 0.2943 | 1.0295 | 0.087* | 0.5 |
| H1B | 0.5768 | 0.1053 | 0.9515 | 0.087* | 0.5 |
| H1C | 0.5483 | 0.3504 | 0.9170 | 0.087* | 0.5 |
| C2 | 0.65719 (16) | 0.2500 | 0.7623 (3) | 0.0409 (5) | |
| C3 | 0.77534 (16) | 0.2500 | 0.5686 (3) | 0.0493 (6) | |
| H3 | 0.8376 | 0.2500 | 0.5208 | 0.059* | |
| C4 | 0.69503 (16) | 0.2500 | 0.4755 (3) | 0.0448 (6) | |
| H4 | 0.6892 | 0.2500 | 0.3486 | 0.054* | |
| O1 | 0.42825 (10) | 0.2500 | 0.55858 (18) | 0.0449 (5) | |
| O2 | 0.46812 (12) | 0.2500 | 0.2772 (2) | 0.0498 (5) | |
| O3 | 0.32003 (10) | 0.2500 | 0.3546 (2) | 0.0482 (5) | |
| N3 | 0.40563 (11) | 0.2500 | 0.3932 (2) | 0.0384 (5) |
| N1 | 0.0421 (10) | 0.0503 (11) | 0.0542 (11) | 0.000 | −0.0184 (8) | 0.000 |
| N2 | 0.0319 (8) | 0.0507 (10) | 0.0324 (8) | 0.000 | −0.0023 (6) | 0.000 |
| C1 | 0.0775 (18) | 0.0625 (15) | 0.0342 (11) | 0.000 | 0.0076 (10) | 0.000 |
| C2 | 0.0430 (11) | 0.0460 (11) | 0.0337 (10) | 0.000 | −0.0045 (8) | 0.000 |
| C3 | 0.0357 (11) | 0.0509 (13) | 0.0612 (14) | 0.000 | 0.0057 (9) | 0.000 |
| C4 | 0.0448 (12) | 0.0522 (12) | 0.0374 (10) | 0.000 | 0.0064 (8) | 0.000 |
| O1 | 0.0360 (8) | 0.0681 (10) | 0.0308 (7) | 0.000 | −0.0011 (5) | 0.000 |
| O2 | 0.0449 (9) | 0.0686 (11) | 0.0359 (8) | 0.000 | 0.0092 (6) | 0.000 |
| O3 | 0.0348 (7) | 0.0592 (10) | 0.0507 (9) | 0.000 | −0.0103 (6) | 0.000 |
| N3 | 0.0344 (8) | 0.0485 (10) | 0.0323 (8) | 0.000 | −0.0005 (6) | 0.000 |
| N1—H1 | 0.82 (4) | C1—H1C | 0.9800 |
| N1—C2 | 1.332 (3) | C1—C2 | 1.474 (3) |
| N1—C3 | 1.376 (3) | C3—H3 | 0.9500 |
| N2—H2 | 0.94 (3) | C3—C4 | 1.331 (3) |
| N2—C2 | 1.329 (2) | C4—H4 | 0.9500 |
| N2—C4 | 1.369 (3) | O1—N3 | 1.274 (2) |
| C1—H1A | 0.9800 | O2—N3 | 1.237 (2) |
| C1—H1B | 0.9800 | O3—N3 | 1.244 (2) |
| C2—N1—H1 | 128 (3) | N1—C2—C1 | 127.3 (2) |
| C2—N1—C3 | 109.29 (19) | N2—C2—N1 | 106.91 (18) |
| C3—N1—H1 | 122 (3) | N2—C2—C1 | 125.8 (2) |
| C2—N2—H2 | 126.1 (18) | N1—C3—H3 | 126.5 |
| C2—N2—C4 | 109.63 (18) | C4—C3—N1 | 106.98 (19) |
| C4—N2—H2 | 124.3 (18) | C4—C3—H3 | 126.5 |
| H1A—C1—H1B | 109.5 | N2—C4—H4 | 126.4 |
| H1A—C1—H1C | 109.5 | C3—C4—N2 | 107.19 (19) |
| H1B—C1—H1C | 109.5 | C3—C4—H4 | 126.4 |
| C2—C1—H1A | 109.5 | O2—N3—O1 | 119.85 (17) |
| C2—C1—H1B | 109.5 | O2—N3—O3 | 122.22 (18) |
| C2—C1—H1C | 109.5 | O3—N3—O1 | 117.93 (16) |
| N1—C3—C4—N2 | 0.000 (1) | C3—N1—C2—C1 | 180.000 (1) |
| C2—N1—C3—C4 | 0.000 (1) | C4—N2—C2—N1 | 0.000 (1) |
| C2—N2—C4—C3 | 0.000 (1) | C4—N2—C2—C1 | 180.000 (1) |
| C3—N1—C2—N2 | 0.000 (1) |
| H··· | ||||
| N1—H1···O1i | 0.82 (4) | 2.12 (4) | 2.894 (2) | 157 (4) |
| N1—H1···O3i | 0.82 (4) | 2.41 (4) | 3.125 (3) | 147 (4) |
| N2—H2···O1 | 0.94 (3) | 1.83 (3) | 2.760 (2) | 167 (3) |
| N2—H2···O2 | 0.94 (3) | 2.50 (3) | 3.231 (2) | 135 (2) |