| Literature DB >> 27367711 |
Guoli Wang1, Yanqing Shen2, Guang Cheng3, Haimei Bo4, Jia Lin5, Maogen Zheng6, Jianmin Li7, Yinzhi Zhao8, Wande Li9.
Abstract
The relationship among the lysyl oxidase (LOX) G473A single nucleotide polymorphism (SNP), cigarette smoking and lung, colorectal, colon and rectum cancer susceptibility was studied in 200 cases of lung cancer, 335 cases of colorectal cancer including 130 cases of colon cancer and 205 cases of rectum cancer, and 335 healthy people in Tangshan, China. Peripheral blood DNA samples were collected, DNA sequencing and polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) performed, followed by multivariate logistic regression analysis. In comparison to LOX473GG genotype carriers, individuals with LOX473AA exhibited a higher susceptibility to lung, colon-rectum, colon, and rectum cancers with OR values amounting to 3.84-, 2.74-, 2.75-, and 2.74-fold of the control, respectively. In the LOX 473AA-positive population, females were more susceptible than males to carcinogenesis with OR values (female vs. male): 5.25 vs. 3.23, 2.29 vs. 1.51, 2.27 vs. 1.45, and 2.25 vs. 1.53, respectively, for lung, colon-rectum combined, colon, and rectum cancers. LOX G473A polymorphism apparently elevated human sensitivity to cigarette smoking carcinogens for eliciting cancers in the lung and colon only. Thus, LOX G473A polymorphism positively correlates with carcinogenesis and it may be used as an ideal intrinsic biomarker for prediction or diagnosis of carcinogenesis in humans.Entities:
Keywords: cigarette smoking; colon cancer; colorectal cancer; lung cancer; lysyl oxidase (LOX); rectal cancer; single nucleotide polymorphism (SNP)
Mesh:
Substances:
Year: 2016 PMID: 27367711 PMCID: PMC4962176 DOI: 10.3390/ijerph13070635
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Figure 1Gene sequence assay indicating LOX G473A polymorphism. GG, the homozygous GG genotype; GA, the heterozygous GA genotype; AA, the homozygous AA genotype. Three genotypes: GG, a black wave in (A); GA, a short black wave overlaid with a shorter green wave in (B); and AA, a green wave in (C) are marked by *.
Figure 2PCR- restriction fragment length polymorphism (PCR-RFLP) analysis for LOX G473A. Total DNA was extracted from the blood sample followed by PCR-amplification using the primers as shown in the text. The PCR product with 214 bp was treated with a specific restriction endonuclease Not I with the CG site targeting and analyzed on a 2% agarose gel, stained with ethidium bromide for visualization under ultraviolet light. After electrophoresis, homozygous G alleles which contain the CG site were recognized by DNA bands at 100 and 114 bp in length. An uncut fragment of 214 bp indicated the homozygous A alleles free of the CG site and the heterozygous GA genotype was displayed as a combination of 214, 100, and 114 bp bands. Due to 114 bp and 100 bp DNA being close in the MW, they were smeared as one band in the gel electrophoresis.
Age and sex distribution in tested population.
| Characteristics | Population Number (%) | ||||
|---|---|---|---|---|---|
| Cancer Group | Control Group | ||||
| 200 (100.00) | 352 (100.00) | ||||
| Age ( | 58.30 ± 9.30 | 58.55 ± 10.29 | −0.35 | 0.73 | |
| Sex | Male | 132 (66.00) | 233 (66.19) | ||
| Female | 68 (34.00) | 119 (33.81) | 0.00 | 0.96 | |
| 335 (100.00) | 352 (100.00) | ||||
| Age ( | 59.04 ± 10.75 | 58.55 ± 10.29 | 0.62 | 0.54 | |
| Sex | Male | 201 (60.00) | 233 (66.19) | ||
| Female | 134 (40.00) | 119 (33.81) | 2.83 | 0.09 | |
| 130 (100.000) | 352 (100.00) | ||||
| Age ( | 60.50 ± 9.66 | 58.55 ± 10.29 | 1.88 | 0.61 | |
| Sex | Male | 74 (56.92) | 233 (66.19) | ||
| Female | 56 (43.08) | 119 (33.81) | 3.53 | 0.06 | |
| 205 (100.00) | 352 (100.00) | ||||
| Age ( | 58.11 ± 11.32 | 58.55 ± 10.29 | 0.46 | 0.64 | |
| Sex | Male | 127 (61.95) | 233 (66.19) | ||
| Female | 78 (38.05) | 119 (33.81) | 1.02 | 0.31 | |
Age difference analysis performed by the T test, represents T value; sex difference analysis performed by the χ2 test. N, population number.
LOX G473A genotype frequency analysis for control group by Hardy-Weinberg Equilibrium (HWE) test.
| Genotypes | Genotype Frequencies (Total | Deviation | |||
|---|---|---|---|---|---|
| Real | Expected | ||||
| GG | 213 | 214.06 | −1.06 | ||
| GA | 123 | 120.88 | 2.12 | 0.11 | 0.95 |
| AA | 16 | 17.06 | −1.06 | ||
HWE performed by the chi-square (χ2) goodness of fit test. N, population number. GG, the homozygous GG genotype; GA, the heterozygous GA genotype; AA, the homozygous AA genotype.
Smoker distribution in tested population.
| Smoking Status | Population | |||
|---|---|---|---|---|
| Cancer Groups | Control Groups | |||
| 200 (100.00) | 352 (100.00) | |||
| Non-smoking | 118 (59.00) | 256 (72.73) | ||
| Smoking | 82 (41.00) | 96 (27.27) | 11.00 | <0.01 * |
| Mild | 16 (8.00) | 69 (19.60) | ||
| Heavy | 66 (33.00) | 27 (7.67) | 48.00 | <0.01 * |
| 335 (100.00) | 352 (100.00) | |||
| Non-smoking | 262 (78.21) | 256 (72.73) | ||
| Smoking | 73 (21.79) | 96 (27.27) | 2.78 | 0.10 |
| Mild | 25 (7.46) | 52 (14.77) | ||
| Heavy | 48 (14.33) | 44 (12.50) | 6.63 | 0.01 * |
| 130 (100.00) | 352 (100.00) | |||
| Non-smoking | 100 (76.92) | 256 (72.73) | ||
| Smoking | 30 (23.08) | 96 (27.27) | 0.87 | 0.35 |
| Mild | 10 (7.69) | 52 (14.77) | ||
| Heavy | 20 (15.38) | 44 (12.50) | 3.97 | 0.04 * |
| 205 (100.00) | 352 (100.00) | |||
| Non-smoking | 162 (79.02) | 256 (72.73) | ||
| Smoking | 43 (20.98) | 96 (27.27) | 2.74 | 0.10 |
| Mild | 15 (7.32) | 52 (14.77) | ||
| Heavy | 28 (13.66) | 44 (12.50) | 4.42 | 0.04 * |
Smoker distribution analysis performed by the χ2 test. Mild smoker, a person who used cigarettes
LOX G473A genotype frequency distribution in tested population.
| Genotypes | Genotype Frequencies (%) | ||||
|---|---|---|---|---|---|
| Cancer Groups | Control Groups | ||||
| 200 (100.00) | 352 (100.00) | ||||
| GG | 118 (59.00) | 213 (60.51) | - | - | 1.00 (Ref.) |
| GA | 48 (24.00) | 123 (34.94) | 2.93 | 0.09 | 0.70 (0.47–1.05) |
| AA | 34 (17.00) | 16 (4.55) | 19.00 | <0.01 | 3.84 (2.03–7.24) * |
| 335 (100.00) | 352 (100.00) | ||||
| GG | 170 (50.75) | 213 (60.51) | - | - | 1.00 (Ref.) |
| GA | 130 (38.80) | 123 (34.94) | 2.99 | 0.08 | 1.32 (0.96–1.82) |
| AA | 35 (10.45) | 16 (4.55) | 10.61 | <0.01 | 2.74 (1.47–5.12) * |
| 130 (100.00) | 352 (100.00) | ||||
| GG | 63 (48.46) | 213 (60.51) | - | - | 1.00 (Ref.) |
| GA | 54 (41.54) | 123 (34.94) | 3.32 | 0.07 | 1.48 (0.97–2.27) |
| AA | 13 (10.00) | 16 (4.55) | 6.79 | 0.01 | 2.75 (1.25–6.02) * |
| 205 (100.00) | 352 (100.00) | ||||
| GG | 107 (52.20) | 213 (60.51) | - | - | 1.00 (Ref.) |
| GA | 76 (37.01) | 123 (34.94) | 1.22 | 0.27 | 1.23 (0.85–1.78) |
| AA | 22 (10.79) | 16 (4.55) | 8.82 | <0.01 | 2.74 (1.38–5.43) * |
LOX G473A genotype frequency analysis performed by the chi-square (χ2) test; OR, odd ratio; CI, confidence interval. Ref., using GG as reference 1; * indicating significance statistically.
LOX G473A allele frequency distribution in tested population.
| Allele | Allele Frequencies (%) | ||||
|---|---|---|---|---|---|
| Cancer Groups | Control Groups | ||||
| 400 (100.00) | 704 (100.00) | ||||
| G | 284 (71.00) | 549 (77.98) | - | - | 1.00 (Ref.) |
| A | 116 (29.00) | 155 (22.02) | 6.72 | 0.01 | 1.45 (1.09–1.91) * |
| 670 (100.00) | 704 (100.00) | ||||
| G | 470 (70.15) | 549 (77.98) | - | - | 1.00 (Ref.) |
| A | 200 (29.85) | 155 (22.02) | 10.99 | 0.01 | 1.5 0 (1.18–1.92) * |
| 260 (100.00) | 704 (100.00) | ||||
| G | 180 (69.23) | 549 (77.98) | - | - | 1.00 (Ref.) |
| A | 80 (30.77) | 155 (22.02) | 7.89 | 0.01 | 1.57 (1.15–2.16) * |
| 410 (100.00) | 704 (100.00) | ||||
| G | 290 (70.73) | 549 (77.98) | - | - | 1.00 (Ref.) |
| A | 120 (29.27) | 155 (22.02) | 7.33 | 0.01 | 1.47 (1.10–1.93) * |
LOX G473A allele frequency analysis performed by the chi-square (χ) test; G, the G allele; A, the A allele; OR, odd ratio; CI, confidence interval; Ref., using G as reference 1. Total allele frequency number = total genotype frequency number × 2; total number for each allele = homozygous number × 2 + heterozygous number; * indicating significance statistically.
Analysis for sex difference in LOX G473A genotype frequency distribution.
| Genotypes | Genotype Frequencies (%) | |||
|---|---|---|---|---|
| Cancer Groups | Control Groups | |||
| 200 (100.00) | 352 (100.00) | |||
| 132 (66.00) | 233 (66.19) | |||
| GG | 72 (36.00) | 133 (37.78) | - | 1.00 (Ref.) |
| GA | 35 (17.50) | 87 (24.72) | 0.26 | 0.75 (0.46–1.24) |
| AA | 25 (12.50) | 13 (3.69) | <0.01 | 3.23 (1.53–6.82) * |
| 68 (34.00) | 119 (33.81) | |||
| GG | 46 (23.00) | 80 (22.73) | - | 1.00 (Ref.) |
| GA | 13 (6.50) | 36 (10.23) | 0.19 | 0.60 (0.29–1.27) |
| AA | 9 (4.50) | 3 (0.85) | 0.02 | 5.25 (1.33–20.80) * |
| 335 (100.00) | 352 (100.00) | |||
| 201 (60.00) | 233 (66.19) | |||
| GG | 105 (31.34) | 133 (37.78) | - | 1.00 (Ref.) |
| GA | 75 (22.39) | 87 (24.72) | 0.67 | 1.09 (0.73–1.63) |
| AA | 21 (6.27) | 13 (3.69) | 0.03 | 1.51 (1.04–2.20) * |
| 134 (40.00) | 119 (33.81) | |||
| GG | 65 (19.40) | 80 (22.73) | - | 1.00 (Ref.) |
| GA | 55 (16.42) | 36 (10.23) | 0.02 | 1.90 (1.11–3.26) * |
| AA | 14 (4.18) | 3 (0.85) | 0.01 | 2.29 (1.20–4.38) * |
| 130 (100.00) | 352 (100.00) | |||
| 74 (56.92) | 233 (66.19) | |||
| GG | 36 (27.69) | 133 (37.78) | - | 1.00 (Ref.) |
| GA | 31 (23.85) | 87 (24.72) | 0.47 | 1.23 (0.71–2.13) |
| AA | 7 (5.38) | 13 (3.69) | 0.14 | 1.46 (0.88–2.43) |
| 56 (43.08) | 119 (33.81) | |||
| GG | 27 (20.77) | 80 (22.73) | - | 1.00 (Ref.) |
| GA | 23 (17.69) | 36 (10.23) | 0.09 | 1.83 (0.91–3.69) |
| AA | 6 (4.62) | 3 (0.85) | 0.03 | 2.27 (1.10–4.70) * |
| 205 (100.00) | 352 (100.00) | |||
| 127 (61.95) | 233 (66.19) | |||
| GG | 69 (33.66) | 133 (37.78) | - | 1.00 (Ref.) |
| GA | 44 (21.46) | 87 (24.72) | 0.92 | 0.98 (0.61–1.56) |
| AA | 14 (6.83) | 13 (3.69) | 0.04 | 1.53 (1.01–2.32) * |
| 78 (38.05) | 119 (33.81) | |||
| GG | 38 (18.54) | 80 (22.73) | - | 1.00 (Ref.) |
| GA | 32 (15.61) | 36 (10.23) | 0.04 | 1.91 (1.03–3.54) * |
| AA | 8 (3.90) | 3 (0.85) | 0.02 | 2.25 (1.11–4.53) * |
Analysis for sex difference in LOX G473A genotypes performed by the unconditional logistic regression test; p values adjusted for age and smoking status; OR, odd ratio; CI, confidence interval. Ref., using GG as reference 1; * indicating significance statistically.
Analysis for smoking status difference (non-smoking and smoking) in LOX G473A genotype frequency distribution.
| Genotypes | Genotype Frequencies (%) | |||
|---|---|---|---|---|
| Cancer Groups | Control Groups | |||
| 200 (100.00) | 352 (100.00) | |||
| Non-smoking | 118 (59.00) | 256 (72.73) | ||
| GG | 75 (37.50) | 156 (44.30) | - | 1.00 (Ref.) |
| GA | 26 (13.00) | 90 (25.60) | 0.08 | 0.62 (0.37–1.05) |
| AA | 17 (8.50) | 10 (2.84) | <0.01 | 3.97 (1.70–9.29) * |
| Smoking | 82 (41.00) | 96 (27.27) | ||
| GG | 43 (21.50) | 57 (16.19) | - | 1.00 (Ref.) |
| GA | 22 (11.00) | 33 (9.38) | 0.67 | 0.86 (0.43–1.73) |
| AA | 17 (8.50) | 6 (1.70) | 0.03 | 3.25 (1.15–9.16) * |
| 335 (100.00) | 352 (100.00) | |||
| Non-smoking | 262 (78.21) | 256 (72.73) | ||
| GG | 136 (40.60) | 156 (44.30) | - | 1.00 (Ref.) |
| GA | 98 (29.25) | 90 (25.60) | 0.23 | 1.25 (0.87–1.81) |
| AA | 28 (8.36) | 10 (2.84) | <0.01 | 1.77 (1.21–2.59) * |
| Smoking | 73 (21.79) | 96 (27.27) | ||
| GG | 34 (10.15) | 57 (16.19) | - | 1.00 (Ref.) |
| GA | 32 (9.55) | 33 (9.38) | 0.14 | 1.67 (0.85–3.27) |
| AA | 7 (2.09) | 6 (1.70) | 0.41 | 1.30 (0.70–2.43) |
| 130 (100.00) | 352 (100.00) | |||
| Non-smoking | 100 (76.920 | 256 (72.73) | ||
| GG | 54 (41.54) | 156 (44.30) | - | 1.00 (Ref.) |
| GA | 38 (29.23) | 90 (25.60) | 0.38 | 1.25 (0.76–2.05) |
| AA | 8 (6.15) | 10 (2.84) | 0.10 | 1.51 (0.92–2.48) |
| Smoking | 30 (23.08) | 96 (27.27) | ||
| GG | 9 (6.92) | 57 (16.19) | - | 1.00 (Ref.) |
| GA | 16 (12.31) | 33 (9.38) | 0.07 | 2.33 (0.94–5.75) |
| AA | 5 (3.85) | 6 (1.70) | 0.04 | 2.11 (1.02–4.38) * |
| 205 (100.00) | 352 (100.00) | |||
| Non-smoking | 162 (79.02) | 256 (72.73) | ||
| GG | 82 (40.00) | 156 (44.30) | - | 1.00 (Ref.) |
| GA | 60 (29.26) | 90 (25.60) | 0.26 | 1.28 (0.84–1.96) |
| AA | 20 (9.76) | 10 (2.84) | <0.01 | 1.86 (1.24–2.80) * |
| Smoking | 43 (20.98) | 96 (27.27) | ||
| GG | 25 (12.20) | 57 (16.19) | - | 1.00 (Ref.) |
| GA | 16 (7.81) | 33 (9.38) | 0.71 | 1.16 (0.53–2.55) |
| AA | 2 (0.98) | 6 (1.70) | 0.71 | 0.84 (0.34–2.09) |
Analysis for smoking status difference in LOX G473A genotypes performed by the unconditional logistic regression test; p values adjusted for age and sex; OR, odd ratio; CI, confidence interval. Ref., using GG as reference 1; * indicates significance statistically.
Analysis for smoking status difference (heavy and mild smoking) in LOX G473A genotype frequency distribution.
| Genotypes | Genotype Frequencies (%) | |||
|---|---|---|---|---|
| Cancer Groups | Control Groups | |||
| 200 (100.00) | 352 (100.00) | |||
| Smoking (Total) | 82 (41.00) | 96 (27.27) | ||
| Heavy-smoking | 66 (33.00) | 27 (7.67) | ||
| GG | 32 (16.00) | 17 (4.83) | - | 1.00 (Ref.) |
| GA | 18 (9.00) | 10 (2.84) | 0.47 | 0.67 (0.25–1.90) |
| AA | 16 (8.00) | 0 (0.00) | <0.01 | - * f |
| Mild-Smoking | 16 (8.00) | 69 (19.60) | ||
| GG | 11 (5.50) | 40 (11.36) | - | 1.00 (Ref.) |
| GA | 4 (2.00) | 23 (6.53) | 0.55 | 0.68 (0.19–2.41) |
| AA | 1 (0.50) | 6 (1.70) | 0.63 | 0.76 (0.25–2.34) |
| 335 (100.00) | 352 (100.00) | |||
| Smoking (Total) | 73 (21.79) | 96 (27.27) | ||
| Heavy-smoking | 48 (14.33) | 44 (12.50) | ||
| GG | 22 (6.57) | 27 (7.67) | - | 1.00 (Ref.) |
| GA | 22 (6.57) | 16 (4.55) | 0.21 | 1.77 (0.73–4.27) |
| AA | 4 (1.19) | 1 (0.28) | 0.16 | 2.36 (0.72–7.77) |
| Mild-Smoking | 25 (7.46) | 52 (14.77) | ||
| GG | 12 (3.58) | 30 (8.52) | - | 1.00 (Ref.) |
| GA | 10 (2.99) | 17 (4.83) | 0.40 | 1.57 (0.54–4.57) |
| AA | 3 (0.90) | 5 (1.42) | 0.98 | 1.01 (0.44–2.33) |
| 130 (100.00) | 352 (100.00) | |||
| Smoking (Total) | 30 (23.08) | 96 (27.27) | ||
| Heavy-smoking | 20 (15.38) | 44 (12.50) | ||
| GG | 6 (4.62) | 27 (7.67) | - | 1.00 (Ref.) |
| GA | 10 (7.69) | 16 (4.55) | 0.18 | 2.31 (0.68–7.84) |
| AA | 4 (3.08) | 1 (0.28) | 0.02 | 18.20 (1.47–225.19) * |
| Mild-Smoking | 10 (7.69) | 52 (14.77) | ||
| GG | 3 (2.31) | 30 (8.52) | - | 1.00 (Ref.) |
| GA | 6 (4.62) | 17 (4.83) | 0.71 | 0.64 (0.06–6.87) |
| AA | 1 (0.77) | 5 (1.42) | 0.73 | 1.54 (0.13–18.76) |
| 205 (100.00) | 352 (100.00) | |||
| Smoking (Total) | 43 (20.98) | 96 (27.27) | ||
| Heavy-smoking | 28 (13.66) | 44 (12.50) | ||
| GG | 16 (7.80) | 27 (7.67) | - | 1.00 (Ref.) |
| GA | 12 (5.85) | 16 (4.55) | 0.56 | 1.35 (0.50–3.65) |
| AA | 0 (0.00) | 1 (0.28) | - | - |
| Mild-Smoking | 15 (7.32) | 52 (14.77) | ||
| GG | 9 (4.39) | 30 (8.52) | - | 1.00 (Ref.) |
| GA | 4 (1.95) | 17 (4.83) | 0.76 | 0.80 (0.21–3.15) |
| AA | 2 (0.98) | 5 (1.42) | 0.91 | 0.90 (0.13–6.00) |
Analysis for smoking status difference in LOX G473A genotypes performed by the unconditional logistic regression test; p values adjusted for age and sex; OR, odd ratio; CI, confidence interval; Mild smoker, a person used cigarette < average ASV, i.e., 30 pack-years in the lung cancer group and 20 pack-years in the colorectal cancer groups; heavy smoker, a person used cigarette ≥ average ASV. Ref., using GG as reference 1; * indicates significance statistically. * f Since 0 case for the genotype AA in the control group, the difference for cancer and control groups was analyzed by the Fisher exact test, the actual p value = 0.007.