Literature DB >> 27362906

Coexistence of Different Electron-Transfer Mechanisms in the DNA Repair Process by Photolyase.

Wook Lee1, Goutham Kodali2, Robert J Stanley3, Spiridoula Matsika3.   

Abstract

DNA photolyase has been the topic of extensive studies due to its important role of repairing photodamaged DNA, and its unique feature of using light as an energy source. A crucial step in the repair by DNA photolyase is the forward electron transfer from its cofactor (FADH(-) ) to the damaged DNA, and the detailed mechanism of this process has been controversial. In the present study, we examine the forward electron transfer in DNA photolyase by carrying out high-level ab initio calculations in combination with a quantum mechanical/molecular mechanical (QM/MM) approach, and by measuring fluorescence emission spectra at low temperature. On the basis of these computational and experimental results, we demonstrate that multiple decay pathways exist in DNA photolyase depending on the wavelength at excitation and the subsequent transition. This implies that the forward electron transfer in DNA photolyase occurs not only by superexchange mechanism but also by sequential electron transfer.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  QM/MM; ab initio calculations; electron transfer; electronic coupling; photolyase

Mesh:

Substances:

Year:  2016        PMID: 27362906     DOI: 10.1002/chem.201600656

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  7 in total

1.  Measuring electronic structure properties of flavins and flavoproteins by electronic Stark spectroscopy.

Authors:  Robert J Stanley; Cornelius J van Galen
Journal:  Methods Enzymol       Date:  2019-04-27       Impact factor: 1.600

2.  Determinants of Photolyase's DNA Repair Mechanism in Mesophiles and Extremophiles.

Authors:  Benjamin J G Rousseau; Shoresh Shafei; Agostino Migliore; Robert J Stanley; David N Beratan
Journal:  J Am Chem Soc       Date:  2018-02-13       Impact factor: 15.419

3.  An Ethenoadenine FAD Analog Accelerates UV Dimer Repair by DNA Photolyase.

Authors:  Madhavan Narayanan; Vijay R Singh; Goutham Kodali; Katarina Moravcevic; Kimberly Jacoby Morris; Robert J Stanley
Journal:  Photochem Photobiol       Date:  2017-01       Impact factor: 3.421

4.  Comparing ultrafast excited state quenching of flavin 1,N6-ethenoadenine dinucleotide and flavin adenine dinucleotide by optical spectroscopy and DFT calculations.

Authors:  Kimberly Jacoby Morris; David T Barnard; Madhavan Narayanan; Megan C Byrne; Rylee A McBride; Vijay R Singh; Robert J Stanley
Journal:  Photochem Photobiol Sci       Date:  2022-02-26       Impact factor: 4.328

5.  Overlapping Electronic States with Nearly Parallel Transition Dipole Moments in Reduced Anionic Flavin Can Distort Photobiological Dynamics.

Authors:  Raymond F Pauszek; Goutham Kodali; M Salim U Siddiqui; Robert J Stanley
Journal:  J Am Chem Soc       Date:  2016-11-08       Impact factor: 15.419

6.  Ultrafast flavin/tryptophan radical pair kinetics in a magnetically sensitive artificial protein.

Authors:  Chris Bialas; David T Barnard; Dirk B Auman; Rylee A McBride; Lauren E Jarocha; P J Hore; P Leslie Dutton; Robert J Stanley; Christopher C Moser
Journal:  Phys Chem Chem Phys       Date:  2019-06-26       Impact factor: 3.676

7.  Theoretical insights into the DNA repair function of Arabidopsis thaliana cryptochrome-DASH.

Authors:  Ryuma Sato; Yoshiharu Mori; Risa Matsui; Noriaki Okimoto; Junpei Yamamoto; Makoto Taiji
Journal:  Biophys Physicobiol       Date:  2020-09-04
  7 in total

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