Literature DB >> 27358465

Whole-Genome Sequencing Elucidates Epidemiology of Nosocomial Clusters of Acinetobacter baumannii.

Stefanie Willems1, Stefanie Kampmeier1, Stefan Bletz1, Annelene Kossow1, Robin Köck2, Frank Kipp1, Alexander Mellmann3.   

Abstract

We characterized two epidemiologically similar Acinetobacter baumannii clusters from two separate intensive care units (ICU) using core genome multilocus sequence typing. Clonal spread was confirmed in ICU-1 (12 of 14 isolates shared genotypes); in ICU-2, all genotypes (13 isolates) were diverse, thus excluding transmissions and enabling adequate infection control measures.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID： 27358465      PMCID： PMC5005500          DOI： 10.1128/JCM.00721-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  24 in total

1.  Longitudinal epidemiology of multidrug-resistant (MDR) Acinetobacter species in a tertiary care hospital.

Authors:  Ji Hoon Baang; Peter Axelrod; Brooke K Decker; Andrea M Hujer; Georgia Dash; Allan R Truant; Robert A Bonomo; Thomas Fekete
Journal:  Am J Infect Control       Date:  2011-08-11       Impact factor: 2.918

Review 2.  Acinetobacter baumannii: evolution of antimicrobial resistance-treatment options.

Authors:  Yohei Doi; Gerald L Murray; Anton Y Peleg
Journal:  Semin Respir Crit Care Med       Date:  2015-02-02       Impact factor: 3.119

3.  High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.

Authors:  T Lewis; N J Loman; L Bingle; P Jumaa; G M Weinstock; D Mortiboy; M J Pallen
Journal:  J Hosp Infect       Date:  2010-03-17       Impact factor: 3.926

4.  Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms.

Authors:  M C Maiden; J A Bygraves; E Feil; G Morelli; J E Russell; R Urwin; Q Zhang; J Zhou; K Zurth; D A Caugant; I M Feavers; M Achtman; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

5.  Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Authors:  Stephen J Salipante; Dhruba J SenGupta; Lisa A Cummings; Tyler A Land; Daniel R Hoogestraat; Brad T Cookson
Journal:  J Clin Microbiol       Date:  2015-01-28       Impact factor: 5.948

6.  Standardization and interlaboratory reproducibility assessment of pulsed-field gel electrophoresis-generated fingerprints of Acinetobacter baumannii.

Authors:  Harald Seifert; Lucilla Dolzani; Raffaela Bressan; Tanny van der Reijden; Beppie van Strijen; Danuta Stefanik; Herre Heersma; Lenie Dijkshoorn
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

7.  The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool.

Authors:  Laure Diancourt; Virginie Passet; Alexandr Nemec; Lenie Dijkshoorn; Sylvain Brisse
Journal:  PLoS One       Date:  2010-04-07       Impact factor: 3.240

Review 8.  Acinetobacter baumannii: emergence of a successful pathogen.

Authors:  Anton Y Peleg; Harald Seifert; David L Paterson
Journal:  Clin Microbiol Rev       Date:  2008-07       Impact factor: 26.132

9.  Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Authors:  Alexander Mellmann; Dag Harmsen; Craig A Cummings; Emily B Zentz; Shana R Leopold; Alain Rico; Karola Prior; Rafael Szczepanowski; Yongmei Ji; Wenlan Zhang; Stephen F McLaughlin; John K Henkhaus; Benjamin Leopold; Martina Bielaszewska; Rita Prager; Pius M Brzoska; Richard L Moore; Simone Guenther; Jonathan M Rothberg; Helge Karch
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

10.  A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.

Authors:  David J Roach; Joshua N Burton; Choli Lee; Bethany Stackhouse; Susan M Butler-Wu; Brad T Cookson; Jay Shendure; Stephen J Salipante
Journal:  PLoS Genet       Date:  2015-07-31       Impact factor: 5.917
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  14 in total

1.  Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdb.

Authors:  Madiha Fida; Scott A Cunningham; Stephan Beisken; Andreas E Posch; Nicholas Chia; Patricio R Jeraldo; Matthew P Murphy; Nicole M Zinsmaster; Robin Patel
Journal:  J Clin Microbiol       Date:  2022-07-12       Impact factor: 11.677

2.  Core genome MLST and resistome analysis of Klebsiella pneumoniae using a clinically amenable workflow.

Authors:  Madiha Fida; Scott A Cunningham; Matthew P Murphy; Robert A Bonomo; Kristine M Hujer; Andrea M Hujer; Barry N Kreiswirth; Nicholas Chia; Patricio R Jeraldo; Heidi Nelson; Nicole M Zinsmaster; Nikhil Toraskar; Weizhong Chang; Robin Patel
Journal:  Diagn Microbiol Infect Dis       Date:  2020-01-21       Impact factor: 2.803

Review 3.  Genomic epidemiology of multidrug-resistant Gram-negative organisms.

Authors:  Shawn E Hawken; Evan S Snitkin
Journal:  Ann N Y Acad Sci       Date:  2018-03-31       Impact factor: 5.691

4.  Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile.

Authors:  Stefan Bletz; Sandra Janezic; Dag Harmsen; Maja Rupnik; Alexander Mellmann
Journal:  J Clin Microbiol       Date:  2018-05-25       Impact factor: 5.948

Review 5.  Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.

Authors:  F Tagini; G Greub
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-06-21       Impact factor: 3.267

Review 6.  The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Authors:  Sion C Bayliss; David W Verner-Jeffreys; Kerry L Bartie; David M Aanensen; Samuel K Sheppard; Alexandra Adams; Edward J Feil
Journal:  Front Microbiol       Date:  2017-02-03       Impact factor: 5.640

7.  Investigation of a Carbapenemase-producing Acinetobacter baumannii outbreak using whole genome sequencing versus a standard epidemiologic investigation.

Authors:  Chloe Bogaty; Laura Mataseje; Andrew Gray; Brigitte Lefebvre; Simon Lévesque; Michael Mulvey; Yves Longtin
Journal:  Antimicrob Resist Infect Control       Date:  2018-11-21       Impact factor: 4.887

8.  One-year molecular surveillance of carbapenem-susceptible A. baumannii on a German intensive care unit: diversity or clonality.

Authors:  Andreas F Wendel; Monika Malecki; Robin Otchwemah; Carlos J Tellez-Castillo; Samir G Sakka; Frauke Mattner
Journal:  Antimicrob Resist Infect Control       Date:  2018-11-26       Impact factor: 4.887

9.  Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire.

Authors:  Mark D Adams; Meredith S Wright; James K Karichu; Pratap Venepally; Derrick E Fouts; Agnes P Chan; Sandra S Richter; Michael R Jacobs; Robert A Bonomo
Journal:  mBio       Date:  2019-03-26       Impact factor: 7.867

10.  Evaluation of a Stenotrophomonas maltophilia bacteremia cluster in hematopoietic stem cell transplantation recipients using whole genome sequencing.

Authors:  Stefanie Kampmeier; Mike H Pillukat; Aleksandra Pettke; Annelene Kossow; Evgeny A Idelevich; Alexander Mellmann
Journal:  Antimicrob Resist Infect Control       Date:  2017-11-13       Impact factor: 4.887
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