Literature DB >> 27357660

Borrowed alleles and convergence in serpentine adaptation.

Brian J Arnold1, Brett Lahner2, Jeffrey M DaCosta3, Caroline M Weisman3, Jesse D Hollister4, David E Salt5, Kirsten Bomblies6, Levi Yant7.   

Abstract

Serpentine barrens represent extreme hazards for plant colonists. These sites are characterized by high porosity leading to drought, lack of essential mineral nutrients, and phytotoxic levels of metals. Nevertheless, nature forged populations adapted to these challenges. Here, we use a population-based evolutionary genomic approach coupled with elemental profiling to assess how autotetraploid Arabidopsis arenosa adapted to a multichallenge serpentine habitat in the Austrian Alps. We first demonstrate that serpentine-adapted plants exhibit dramatically altered elemental accumulation levels in common conditions, and then resequence 24 autotetraploid individuals from three populations to perform a genome scan. We find evidence for highly localized selective sweeps that point to a polygenic, multitrait basis for serpentine adaptation. Comparing our results to a previous study of independent serpentine colonizations in the closely related diploid Arabidopsis lyrata in the United Kingdom and United States, we find the highest levels of differentiation in 11 of the same loci, providing candidate alleles for mediating convergent evolution. This overlap between independent colonizations in different species suggests that a limited number of evolutionary strategies are suited to overcome the multiple challenges of serpentine adaptation. Interestingly, we detect footprints of selection in A. arenosa in the context of substantial gene flow from nearby off-serpentine populations of A. arenosa, as well as from A. lyrata In several cases, quantitative tests of introgression indicate that some alleles exhibiting strong selective sweep signatures appear to have been introgressed from A. lyrata This finding suggests that migrant alleles may have facilitated adaptation of A. arenosa to this multihazard environment.

Entities:  

Keywords:  adaptation; gene flow; plant; population genomics

Mesh:

Substances:

Year:  2016        PMID: 27357660      PMCID: PMC4961121          DOI: 10.1073/pnas.1600405113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

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Authors:  J Vlamis; H Jenny
Journal:  Science       Date:  1948-05-21       Impact factor: 47.728

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Authors:  Takehiro Kamiya; Monica Borghi; Peng Wang; John M C Danku; Lothar Kalmbach; Prashant S Hosmani; Sadaf Naseer; Toru Fujiwara; Niko Geldner; David E Salt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

6.  Arabidopsis hybrid speciation processes.

Authors:  Roswitha Schmickl; Marcus A Koch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

7.  Single Geographic Origin of a Widespread Autotetraploid Arabidopsis arenosa Lineage Followed by Interploidy Admixture.

Authors:  Brian Arnold; Sang-Tae Kim; Kirsten Bomblies
Journal:  Mol Biol Evol       Date:  2015-04-10       Impact factor: 16.240

8.  The vacuolar Ca2+-activated channel TPC1 regulates germination and stomatal movement.

Authors:  Edgar Peiter; Frans J M Maathuis; Lewis N Mills; Heather Knight; Jérôme Pelloux; Alistair M Hetherington; Dale Sanders
Journal:  Nature       Date:  2005-03-17       Impact factor: 49.962

9.  Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa.

Authors:  Jesse D Hollister; Brian J Arnold; Elisabeth Svedin; Katherine S Xue; Brian P Dilkes; Kirsten Bomblies
Journal:  PLoS Genet       Date:  2012-12-20       Impact factor: 5.917

10.  The probability of genetic parallelism and convergence in natural populations.

Authors:  Gina L Conte; Matthew E Arnegard; Catherine L Peichel; Dolph Schluter
Journal:  Proc Biol Sci       Date:  2012-10-17       Impact factor: 5.349

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  42 in total

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Review 2.  Adaptive introgression: a plant perspective.

Authors:  Adriana Suarez-Gonzalez; Christian Lexer; Quentin C B Cronk
Journal:  Biol Lett       Date:  2018-03       Impact factor: 3.703

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6.  Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives.

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

7.  Transcriptome Signatures of Selection, Drift, Introgression, and Gene Duplication in the Evolution of an Extremophile Endemic Plant.

Authors:  Angela K Hawkins; Elyssa R Garza; Valerie A Dietz; Oscar J Hernandez; W Daryl Hawkins; A Millie Burrell; Alan E Pepper
Journal:  Genome Biol Evol       Date:  2017-12-01       Impact factor: 3.416

8.  A yeast living ancestor reveals the origin of genomic introgressions.

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Journal:  Nature       Date:  2020-11-11       Impact factor: 49.962

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Journal:  Ecol Evol       Date:  2021-06-27       Impact factor: 2.912

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