Literature DB >> 27357617

Next-generation phenotypic screening.

Scott J Warchal1, Asier Unciti-Broceta1, Neil O Carragher1.   

Abstract

Phenotypic drug discovery (PDD) strategies are defined by screening and selection of hit or lead compounds based on quantifiable phenotypic endpoints without prior knowledge of the drug target. We outline the challenges associated with traditional phenotypic screening strategies and propose solutions and new opportunities to be gained by adopting modern PDD technologies. We highlight both historical and recent examples of approved drugs and new drug candidates discovered by modern phenotypic screening. Finally, we offer a prospective view of a new era of PDD underpinned by a wealth of technology advances in the areas of in vitro model development, high-content imaging and image informatics, mechanism-of-action profiling and target deconvolution.

Entities:  

Keywords:  high content; image informatics; mechanism of action; pathway profiling; phenotypic; screening; target deconvolution; transcriptomics

Mesh:

Substances:

Year:  2016        PMID: 27357617     DOI: 10.4155/fmc-2016-0025

Source DB:  PubMed          Journal:  Future Med Chem        ISSN: 1756-8919            Impact factor:   3.808


  9 in total

1.  High-Precision Photothermal Ablation Using Biocompatible Palladium Nanoparticles and Laser Scanning Microscopy.

Authors:  Belén Rubio-Ruiz; Ana M Pérez-López; Thomas L Bray; Martin Lee; Alan Serrels; Martín Prieto; Manuel Arruebo; Neil O Carragher; Víctor Sebastián; Asier Unciti-Broceta
Journal:  ACS Appl Mater Interfaces       Date:  2018-01-22       Impact factor: 9.229

Review 2.  Application of CRISPR/Cas9 to human-induced pluripotent stem cells: from gene editing to drug discovery.

Authors:  Claudia De Masi; Paola Spitalieri; Michela Murdocca; Giuseppe Novelli; Federica Sangiuolo
Journal:  Hum Genomics       Date:  2020-06-26       Impact factor: 4.639

3.  Evaluation of Machine Learning Classifiers to Predict Compound Mechanism of Action When Transferred across Distinct Cell Lines.

Authors:  Scott J Warchal; John C Dawson; Neil O Carragher
Journal:  SLAS Discov       Date:  2019-01-29       Impact factor: 3.341

Review 4.  Image-based profiling for drug discovery: due for a machine-learning upgrade?

Authors:  Srinivas Niranj Chandrasekaran; Hugo Ceulemans; Justin D Boyd; Anne E Carpenter
Journal:  Nat Rev Drug Discov       Date:  2020-12-22       Impact factor: 84.694

5.  Exploring gene knockout strategies to identify potential drug targets using genome-scale metabolic models.

Authors:  Abhijit Paul; Rajat Anand; Sonali Porey Karmakar; Surender Rawat; Nandadulal Bairagi; Samrat Chatterjee
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

Review 6.  In vitro Assays and Imaging Methods for Drug Discovery for Cardiac Fibrosis.

Authors:  Giorgia Palano; Ariana Foinquinos; Erik Müllers
Journal:  Front Physiol       Date:  2021-07-08       Impact factor: 4.566

Review 7.  Human Pluripotent Stem-Cell-Derived Models as a Missing Link in Drug Discovery and Development.

Authors:  Xiying Lin; Jiayu Tang; Yan-Ru Lou
Journal:  Pharmaceuticals (Basel)       Date:  2021-05-30

8.  Pyrazolopyrimide library screening in glioma cells discovers highly potent antiproliferative leads that target the PI3K/mTOR pathway.

Authors:  Teresa Valero; Daniel J Baillache; Craig Fraser; Samuel H Myers; Asier Unciti-Broceta
Journal:  Bioorg Med Chem       Date:  2019-11-25       Impact factor: 3.641

9.  The Mini-Organo: A rapid high-throughput 3D coculture organotypic assay for oncology screening and drug development.

Authors:  Jessica L Chitty; Joanna N Skhinas; Elysse C Filipe; Shan Wang; Carmen Rodriguez Cupello; Rhiannon D Grant; Michelle Yam; Michael Papanicolaou; Gretel Major; Anaiis Zaratzian; Andrew M Da Silva; Michael Tayao; Claire Vennin; Paul Timpson; Chris D Madsen; Thomas R Cox
Journal:  Cancer Rep (Hoboken)       Date:  2019-08-01
  9 in total

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