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Literature DB >> 27355792

Genotyping tumor clones from single-cell data.

Nicholas E Navin¹, Ken Chen².

Abstract

Entities: Disease

Mesh：

Year: 2016 PMID： 27355792 DOI： 10.1038/nmeth.3903

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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10 in total

Review 1. Single-cell genome sequencing: current state of the science.

Authors: Charles Gawad; Winston Koh; Stephen R Quake
Journal: Nat Rev Genet Date: 2016-01-25 Impact factor: 53.242

2. Monovar: single-nucleotide variant detection in single cells.

Authors: Hamim Zafar; Yong Wang; Luay Nakhleh; Nicholas Navin; Ken Chen
Journal: Nat Methods Date: 2016-04-18 Impact factor: 28.547

3. Dissecting the clonal origins of childhood acute lymphoblastic leukemia by single-cell genomics.

Authors: Charles Gawad; Winston Koh; Stephen R Quake
Journal: Proc Natl Acad Sci U S A Date: 2014-11-25 Impact factor: 11.205

4. Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.

Authors: Andrew McPherson; Andrew Roth; Emma Laks; Tehmina Masud; Ali Bashashati; Allen W Zhang; Gavin Ha; Justina Biele; Damian Yap; Adrian Wan; Leah M Prentice; Jaswinder Khattra; Maia A Smith; Cydney B Nielsen; Sarah C Mullaly; Steve Kalloger; Anthony Karnezis; Karey Shumansky; Celia Siu; Jamie Rosner; Hector Li Chan; Julie Ho; Nataliya Melnyk; Janine Senz; Winnie Yang; Richard Moore; Andrew J Mungall; Marco A Marra; Alexandre Bouchard-Côté; C Blake Gilks; David G Huntsman; Jessica N McAlpine; Samuel Aparicio; Sohrab P Shah
Journal: Nat Genet Date: 2016-05-16 Impact factor: 38.330

5. Clonal genotype and population structure inference from single-cell tumor sequencing.

Authors: Andrew Roth; Andrew McPherson; Emma Laks; Justina Biele; Damian Yap; Adrian Wan; Maia A Smith; Cydney B Nielsen; Jessica N McAlpine; Samuel Aparicio; Alexandre Bouchard-Côté; Sohrab P Shah
Journal: Nat Methods Date: 2016-05-16 Impact factor: 28.547

6. BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies.

Authors: Ke Yuan; Thomas Sakoparnig; Florian Markowetz; Niko Beerenwinkel
Journal: Genome Biol Date: 2015-02-13 Impact factor: 13.583

7. The first five years of single-cell cancer genomics and beyond.

Authors: Nicholas E Navin
Journal: Genome Res Date: 2015-10 Impact factor: 9.043

8. OncoNEM: inferring tumor evolution from single-cell sequencing data.

Authors: Edith M Ross; Florian Markowetz
Journal: Genome Biol Date: 2016-04-15 Impact factor: 13.583

Review 9. Cancer genomics: one cell at a time.

Authors: Nicholas E Navin
Journal: Genome Biol Date: 2014-08-30 Impact factor: 13.583

10. Tree inference for single-cell data.

Authors: Katharina Jahn; Jack Kuipers; Niko Beerenwinkel
Journal: Genome Biol Date: 2016-05-05 Impact factor: 13.583

10 in total

5 in total

1. Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes.

Authors: Davis J McCarthy; Raghd Rostom; Yuanhua Huang; Daniel J Kunz; Petr Danecek; Marc Jan Bonder; Tzachi Hagai; Ruqian Lyu; Wenyi Wang; Daniel J Gaffney; Benjamin D Simons; Oliver Stegle; Sarah A Teichmann
Journal: Nat Methods Date: 2020-03-16 Impact factor: 28.547