Literature DB >> 27352221

Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on quality control of autosomal Short Tandem Repeat allele frequency databasing (STRidER).

Martin Bodner1, Ingo Bastisch2, John M Butler3, Rolf Fimmers4, Peter Gill5, Leonor Gusmão6, Niels Morling7, Christopher Phillips8, Mechthild Prinz9, Peter M Schneider10, Walther Parson11.   

Abstract

The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics. Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.
Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Forensic genetics; Population data; Quality control; STR database; Short tandem repeat

Mesh:

Year:  2016        PMID: 27352221     DOI: 10.1016/j.fsigen.2016.06.008

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  16 in total

1.  Forensic parameters and genetic structure analysis of 30 autosomal InDels of the population in Freetown, Sierra Leone.

Authors:  Han Wang; Foday Ambrose Marah; Moses Moseray; Moutanou Modeste Judes Zeye; Ying Liu; Jienan Li; Lagabaiyila Zha
Journal:  Int J Legal Med       Date:  2020-08-31       Impact factor: 2.686

2.  Population data and phylogenetic structure of Han population from Jiangsu province of China on GlobalFiler STR loci.

Authors:  Atif Adnan; Xiaoni Zhan; Kadirya Kasim; Allah Rakha; Xing Jia Xin
Journal:  Int J Legal Med       Date:  2018-03-02       Impact factor: 2.686

3.  STRSeq: A catalog of sequence diversity at human identification Short Tandem Repeat loci.

Authors:  Katherine Butler Gettings; Lisa A Borsuk; David Ballard; Martin Bodner; Bruce Budowle; Laurence Devesse; Jonathan King; Walther Parson; Christopher Phillips; Peter M Vallone
Journal:  Forensic Sci Int Genet       Date:  2017-09-01       Impact factor: 4.882

4.  Genetic variations and forensic characteristics of Han Chinese population residing in the Pearl River Delta revealed by 23 autosomal STRs.

Authors:  Guanglin He; Zheng Wang; Mengge Wang; Xing Zou; Jing Liu; Shouyu Wang; Yiping Hou
Journal:  Mol Biol Rep       Date:  2018-07-18       Impact factor: 2.316

5.  Sequencing of human identification markers in an Uyghur population using the MiSeq FGxTM Forensic Genomics System.

Authors:  Halimureti Simayijiang; Niels Morling; Claus Børsting
Journal:  Forensic Sci Res       Date:  2020-09-10

6.  Helena's Many Daughters: More Mitogenome Diversity behind the Most Common West Eurasian mtDNA Control Region Haplotype in an Extended Italian Population Sample.

Authors:  Martin Bodner; Christina Amory; Anna Olivieri; Francesca Gandini; Irene Cardinali; Hovirag Lancioni; Gabriela Huber; Catarina Xavier; Maria Pala; Alessandro Fichera; Lisa Schnaller; Mario Gysi; Stefania Sarno; Davide Pettener; Donata Luiselli; Martin B Richards; Ornella Semino; Alessandro Achilli; Antonio Torroni; Walther Parson
Journal:  Int J Mol Sci       Date:  2022-06-16       Impact factor: 6.208

7.  Report from the STRAND Working Group on the 2019 STR sequence nomenclature meeting.

Authors:  Katherine Butler Gettings; David Ballard; Martin Bodner; Lisa A Borsuk; Jonathan L King; Walther Parson; Christopher Phillips
Journal:  Forensic Sci Int Genet       Date:  2019-09-21       Impact factor: 4.882

8.  Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a Tibetan population using massively parallel sequencing.

Authors:  Dan Peng; Yinming Zhang; Han Ren; Haixia Li; Ran Li; Xuefeng Shen; Nana Wang; Erwen Huang; Riga Wu; Hongyu Sun
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

9.  The STRidER Report on Two Years of Quality Control of Autosomal STR Population Datasets.

Authors:  Martin Bodner; Walther Parson
Journal:  Genes (Basel)       Date:  2020-08-07       Impact factor: 4.096

10.  Inter-laboratory study on standardized MPS libraries: evaluation of performance, concordance, and sensitivity using mixtures and degraded DNA.

Authors:  Petra Müller; Christian Sell; Thorsten Hadrys; Johannes Hedman; Steffi Bredemeyer; Francois-Xavier Laurent; Lutz Roewer; Sabrina Achtruth; Maja Sidstedt; Titia Sijen; Marc Trimborn; Natalie Weiler; Sascha Willuweit; Ingo Bastisch; Walther Parson
Journal:  Int J Legal Med       Date:  2019-11-19       Impact factor: 2.686

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