Literature DB >> 27340904

A QM/MM Approach Using the AMOEBA Polarizable Embedding: From Ground State Energies to Electronic Excitations.

Daniele Loco1, Étienne Polack2,3, Stefano Caprasecca1, Louis Lagardère2,4, Filippo Lipparini5, Jean-Philip Piquemal2,6,7, Benedetta Mennucci1.   

Abstract

A fully polarizable implementation of the hybrid quantum mechanics/molecular mechanics approach is presented, where the classical environment is described through the AMOEBA polarizable force field. A variational formalism, offering a self-consistent relaxation of both the MM induced dipoles and the QM electronic density, is used for ground state energies and extended to electronic excitations in the framework of time-dependent density functional theory combined with a state specific response of the classical part. An application to the calculation of the solvatochromism of the pyridinium N-phenolate betaine dye used to define the solvent ET(30) scale is presented. The results show that the QM/AMOEBA model not only properly describes specific and bulk effects in the ground state but it also correctly responds to the large change in the solute electronic charge distribution upon excitation.

Entities:  

Year:  2016        PMID: 27340904     DOI: 10.1021/acs.jctc.6b00385

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  23 in total

1.  An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches.

Authors:  Jing Huang; Ye Mei; Gerhard König; Andrew C Simmonett; Frank C Pickard; Qin Wu; Lee-Ping Wang; Alexander D MacKerell; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2017-01-24       Impact factor: 6.006

2.  A Many-Body, Fully Polarizable Approach to QM/MM Simulations.

Authors:  Eleftherios Lambros; Filippo Lipparini; Gerardo Andrés Cisneros; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2020-11-19       Impact factor: 6.006

3.  AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids.

Authors:  Changsheng Zhang; Chao Lu; Zhifeng Jing; Chuanjie Wu; Jean-Philip Piquemal; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2018-03-06       Impact factor: 6.006

4.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

5.  Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex.

Authors:  Lorenzo Cupellini; Pu Qian; Tu C Nguyen-Phan; Alastair T Gardiner; Richard J Cogdell
Journal:  Photosynth Res       Date:  2022-06-08       Impact factor: 3.573

6.  Evaluation of molecular photophysical and photochemical properties using linear response time-dependent density functional theory with classical embedding: Successes and challenges.

Authors:  WanZhen Liang; Zheng Pei; Yuezhi Mao; Yihan Shao
Journal:  J Chem Phys       Date:  2022-06-07       Impact factor: 4.304

7.  Modeling solvation effects on absorption and fluorescence spectra of indole in aqueous solution.

Authors:  Salsabil Abou-Hatab; Vincenzo Carnevale; Spiridoula Matsika
Journal:  J Chem Phys       Date:  2021-02-14       Impact factor: 3.488

8.  Development and application of quantum mechanics/molecular mechanics methods with advanced polarizable potentials.

Authors:  Jorge Nochebuena; Sehr Naseem-Khan; G Andrés Cisneros
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2021-01-12

9.  QM/MM Investigation of the Spectroscopic Properties of the Fluorophore of Bacterial Luciferase.

Authors:  Germano Giuliani; Federico Melaccio; Samer Gozem; Andrea Cappelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2021-01-15       Impact factor: 6.578

Review 10.  Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules.

Authors:  Marco Marazzi; Hugo Gattuso; Antonio Monari; Xavier Assfeld
Journal:  Front Chem       Date:  2018-04-03       Impact factor: 5.221

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