Literature DB >> 27339858

Coherent pump pulses in Double Electron Electron Resonance spectroscopy.

Claudia E Tait1, Stefan Stoll.   

Abstract

The recent introduction of shaped pulses to Double Electron Electron Resonance (DEER) spectroscopy has led to significant enhancements in sensitivity through increased excitation bandwidths and improved control over spin dynamics. The application of DEER has so far relied on the presence of an incoherent pump channel to average out most undesired coherent effects of the pump pulse(s) on the observer spins. However, in fully coherent EPR spectrometers that are increasingly used to generate shaped pulses, the presence of coherent pump pulses means that these effects need to be explicitly considered. In this paper, we examine the effects of coherent rectangular and sech/tanh pump pulses in DEER experiments with up to three pump pulses. We show that, even in the absence of significant overlap of the observer and pump pulse excitation bandwidths, coherence transfer pathways involving both types of pulses generate spin echoes of considerable intensity. These echoes introduce artefacts, which, if not identified and removed, can easily lead to misinterpretation. We demonstrate that the observed echoes can be quantitatively modelled using a simple spin quantum dynamics approach that includes instrumental transfer functions. Based on an analysis of the echo crossing artefacts, we propose efficient phase cycling schemes for their suppression. This enables the use of advanced DEER experiments, characterized by high sensitivity and increased accuracy for long-distance measurements, on novel fully coherent EPR spectrometers.

Entities:  

Year:  2016        PMID: 27339858      PMCID: PMC4939075          DOI: 10.1039/c6cp03555h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  21 in total

1.  Gd(III)-Gd(III) distance measurements with chirp pump pulses.

Authors:  Andrin Doll; Mian Qi; Nino Wili; Stephan Pribitzer; Adelheid Godt; Gunnar Jeschke
Journal:  J Magn Reson       Date:  2015-08-28       Impact factor: 2.229

2.  SPIDYAN, a MATLAB library for simulating pulse EPR experiments with arbitrary waveform excitation.

Authors:  Stephan Pribitzer; Andrin Doll; Gunnar Jeschke
Journal:  J Magn Reson       Date:  2016-01-04       Impact factor: 2.229

3.  Adiabatic and fast passage ultra-wideband inversion in pulsed EPR.

Authors:  Andrin Doll; Stephan Pribitzer; René Tschaggelar; Gunnar Jeschke
Journal:  J Magn Reson       Date:  2013-01-23       Impact factor: 2.229

4.  Broadband spin echoes and broadband SIFTER in EPR.

Authors:  Philipp Schöps; Philipp E Spindler; Andriy Marko; Thomas F Prisner
Journal:  J Magn Reson       Date:  2014-11-26       Impact factor: 2.229

5.  Broadband inversion PELDOR spectroscopy with partially adiabatic shaped pulses.

Authors:  Philipp E Spindler; Steffen J Glaser; Thomas E Skinner; Thomas F Prisner
Journal:  Angew Chem Int Ed Engl       Date:  2013-02-19       Impact factor: 15.336

6.  Distance Measurement on an Endogenous Membrane Transporter in E. coli Cells and Native Membranes Using EPR Spectroscopy.

Authors:  Benesh Joseph; Arthur Sikora; Enrica Bordignon; Gunnar Jeschke; David S Cafiso; Thomas F Prisner
Journal:  Angew Chem Int Ed Engl       Date:  2015-03-31       Impact factor: 15.336

7.  Structural mechanism for the regulation of HCN ion channels by the accessory protein TRIP8b.

Authors:  Hannah A DeBerg; John R Bankston; Joel C Rosenbaum; Peter S Brzovic; William N Zagotta; Stefan Stoll
Journal:  Structure       Date:  2015-03-19       Impact factor: 5.006

8.  Room-temperature distance measurements of immobilized spin-labeled protein by DEER/PELDOR.

Authors:  Virginia Meyer; Michael A Swanson; Laura J Clouston; Przemysław J Boratyński; Richard A Stein; Hassane S Mchaourab; Andrzej Rajca; Sandra S Eaton; Gareth R Eaton
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

9.  Carr-Purcell Pulsed Electron Double Resonance with Shaped Inversion Pulses.

Authors:  Philipp E Spindler; Izabela Waclawska; Burkhard Endeward; Jörn Plackmeyer; Christine Ziegler; Thomas F Prisner
Journal:  J Phys Chem Lett       Date:  2015-10-19       Impact factor: 6.475

10.  Taking a molecular motor for a spin: helicase mechanism studied by spin labeling and PELDOR.

Authors:  Diana Constantinescu-Aruxandei; Biljana Petrovic-Stojanovska; Olav Schiemann; James H Naismith; Malcolm F White
Journal:  Nucleic Acids Res       Date:  2015-12-10       Impact factor: 16.971

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  7 in total

1.  Enhancing sensitivity of Double Electron-Electron Resonance (DEER) by using Relaxation-Optimized Acquisition Length Distribution (RELOAD) scheme.

Authors:  Sergey Milikisiyants; Maxim A Voinov; Antonin Marek; Morteza Jafarabadi; Jing Liu; Rong Han; Shenlin Wang; Alex I Smirnov
Journal:  J Magn Reson       Date:  2018-12-05       Impact factor: 2.229

2.  ENDOR with band-selective shaped inversion pulses.

Authors:  Claudia E Tait; Stefan Stoll
Journal:  J Magn Reson       Date:  2017-02-12       Impact factor: 2.229

3.  Dipolar pathways in dipolar EPR spectroscopy.

Authors:  Luis Fábregas-Ibáñez; Maxx H Tessmer; Gunnar Jeschke; Stefan Stoll
Journal:  Phys Chem Chem Phys       Date:  2022-01-26       Impact factor: 3.676

4.  Integration of a versatile bridge concept in a 34 GHz pulsed/CW EPR spectrometer.

Authors:  Alan Band; Matthew P Donohue; Boris Epel; Shraeya Madhu; Veronika A Szalai
Journal:  J Magn Reson       Date:  2018-02-02       Impact factor: 2.229

5.  Natural Conformational Sampling of Human TNFα Visualized by Double Electron-Electron Resonance.

Authors:  Bruce Carrington; William K Myers; Peter Horanyi; Mark Calmiano; Alastair D G Lawson
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

6.  In situ observation of conformational dynamics and protein ligand-substrate interactions in outer-membrane proteins with DEER/PELDOR spectroscopy.

Authors:  Benesh Joseph; Eva A Jaumann; Arthur Sikora; Katja Barth; Thomas F Prisner; David S Cafiso
Journal:  Nat Protoc       Date:  2019-07-05       Impact factor: 13.491

Review 7.  Electron Paramagnetic Resonance as a Tool for Studying Membrane Proteins.

Authors:  Indra D Sahu; Gary A Lorigan
Journal:  Biomolecules       Date:  2020-05-13
  7 in total

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