Literature DB >> 27330829

brainR: Interactive 3 and 4D Images of High Resolution Neuroimage Data.

John Muschelli1, Elizabeth Sweeney2, Ciprian Crainiceanu3.   

Abstract

We provide software tools for displaying and publishing interactive 3-dimensional (3D) and 4-dimensional (4D) figures to html webpages, with examples of high-resolution brain imaging. Our framework is based in the R statistical software using the rgl package, a 3D graphics library. We build on this package to allow manipulation of figures including rotation and translation, zooming, coloring of brain substructures, adjusting transparency levels, and addition/or removal of brain structures. The need for better visualization tools of ultra high dimensional data is ever present; we are providing a clean, simple, web-based option. We also provide a package (brainR) for users to readily implement these tools.

Entities:  

Year:  2014        PMID: 27330829      PMCID: PMC4911196     

Source DB:  PubMed          Journal:  R J        ISSN: 2073-4859            Impact factor:   3.984


  3 in total

1.  Symmetric atlasing and model based segmentation: an application to the hippocampus in older adults.

Authors:  Günther Grabner; Andrew L Janke; Marc M Budge; David Smith; Jens Pruessner; D Louis Collins
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

2.  Automatic lesion incidence estimation and detection in multiple sclerosis using multisequence longitudinal MRI.

Authors:  E M Sweeney; R T Shinohara; C D Shea; D S Reich; C M Crainiceanu
Journal:  AJNR Am J Neuroradiol       Date:  2012-07-05       Impact factor: 3.825

3.  Embedding and publishing interactive, 3-dimensional, scientific figures in Portable Document Format (PDF) files.

Authors:  David G Barnes; Michail Vidiassov; Bernhard Ruthensteiner; Christopher J Fluke; Michelle R Quayle; Colin R McHenry
Journal:  PLoS One       Date:  2013-09-25       Impact factor: 3.240

  3 in total
  3 in total

1.  MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions.

Authors:  Alessandra M Valcarcel; Kristin A Linn; Simon N Vandekar; Theodore D Satterthwaite; John Muschelli; Peter A Calabresi; Dzung L Pham; Melissa Lynne Martin; Russell T Shinohara
Journal:  J Neuroimaging       Date:  2018-03-08       Impact factor: 2.486

2.  Bayes estimate of primary threshold in clusterwise functional magnetic resonance imaging inferences.

Authors:  Yunjiang Ge; Stephanie Hare; Gang Chen; James A Waltz; Peter Kochunov; L Elliot Hong; Shuo Chen
Journal:  Stat Med       Date:  2021-07-26       Impact factor: 2.373

3.  ABrainVis: an android brain image visualization tool.

Authors:  Ignacio Osorio; Miguel Guevara; Danilo Bonometti; Diego Carrasco; Maxime Descoteaux; Cyril Poupon; Jean-François Mangin; Cecilia Hernández; Pamela Guevara
Journal:  Biomed Eng Online       Date:  2021-07-29       Impact factor: 2.819

  3 in total

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