Literature DB >> 27329717

Investigation of the influence of protein corona composition on gold nanoparticle bioactivity using machine learning approaches.

E Papa1,2, J P Doucet2, A Sangion1,2, A Doucet-Panaye2.   

Abstract

The understanding of the mechanisms and interactions that occur when nanomaterials enter biological systems is important to improve their future use. The adsorption of proteins from biological fluids in a physiological environment to form a corona on the surface of nanoparticles represents a key step that influences nanoparticle behaviour. In this study, the quantitative description of the composition of the protein corona was used to study the effect on cell association induced by 84 surface-modified gold nanoparticles of different sizes. Quantitative relationships between the protein corona and the activity of the gold nanoparticles were modelled by using several machine learning-based linear and non-linear approaches. Models based on a selection of only six serum proteins had robust and predictive results. The Projection Pursuit Regression method had the best performances (r(2) = 0.91; Q(2)loo = 0.81; r(2)ext = 0.79). The present study confirmed the utility of protein corona composition to predict the bioactivity of gold nanoparticles and identified the main proteins that act as promoters or inhibitors of cell association. In addition, the comparison of several techniques showed which strategies offer the best results in prediction and could be used to support new toxicological studies on gold-based nanomaterials.

Keywords:  Nanoparticles; computational nanotoxicology; in silico models; machine learning; protein corona

Mesh:

Substances:

Year:  2016        PMID: 27329717     DOI: 10.1080/1062936X.2016.1197310

Source DB:  PubMed          Journal:  SAR QSAR Environ Res        ISSN: 1026-776X            Impact factor:   3.000


  6 in total

1.  Machine learning provides predictive analysis into silver nanoparticle protein corona formation from physicochemical properties.

Authors:  Matthew R Findlay; Daniel N Freitas; Maryam Mobed-Miremadi; Korin E Wheeler
Journal:  Environ Sci Nano       Date:  2017-11-01

Review 2.  Toward a systematic exploration of nano-bio interactions.

Authors:  Xue Bai; Fang Liu; Yin Liu; Cong Li; Shenqing Wang; Hongyu Zhou; Wenyi Wang; Hao Zhu; David A Winkler; Bing Yan
Journal:  Toxicol Appl Pharmacol       Date:  2017-03-24       Impact factor: 4.219

3.  Bioinformatics-Based Approaches to Study Virus-Host Interactions During SARS-CoV-2 Infection.

Authors:  Muhammad Saad Khan; Qudsia Yousafi; Shabana Bibi; Muhammad Azhar; Awais Ihsan
Journal:  Methods Mol Biol       Date:  2022

4.  Evaluating the cytotoxicity of a large pool of metal oxide nanoparticles to Escherichia coli: Mechanistic understanding through In Vitro and In Silico studies.

Authors:  Supratik Kar; Kavitha Pathakoti; Paul B Tchounwou; Danuta Leszczynska; Jerzy Leszczynski
Journal:  Chemosphere       Date:  2020-09-25       Impact factor: 7.086

Review 5.  Practices and Trends of Machine Learning Application in Nanotoxicology.

Authors:  Irini Furxhi; Finbarr Murphy; Martin Mullins; Athanasios Arvanitis; Craig A Poland
Journal:  Nanomaterials (Basel)       Date:  2020-01-08       Impact factor: 5.076

6.  Nano-Lazar: Read across Predictions for Nanoparticle Toxicities with Calculated and Measured Properties.

Authors:  Christoph Helma; Micha Rautenberg; Denis Gebele
Journal:  Front Pharmacol       Date:  2017-06-16       Impact factor: 5.810

  6 in total

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