Literature DB >> 27327046

Use of a fluoride channel as a new selection marker for fission yeast plasmids and application to fast genome editing with CRISPR/Cas9.

Ronan Fernandez1,2, Julien Berro3,4.   

Abstract

Fission yeast is a powerful model organism that has provided insights into important cellular processes thanks to the ease of its genome editing by homologous recombination. However, creation of strains with a large number of targeted mutations or containing plasmids has been challenging because only a very small number of selection markers is available in Schizosaccharomyces pombe. In this paper, we identify two fission yeast fluoride exporter channels (Fex1p and Fex2p) and describe the development of a new strategy using Fex1p as a selection marker for transformants in rich media supplemented with fluoride. To our knowledge this is the first positive selection marker identified in S. pombe that does not use auxotrophy or drug resistance and that can be used for plasmids transformation or genomic integration in rich media. We illustrate the application of our new marker by significantly accelerating the protocol for genome edition using CRISPR/Cas9 in S. pombe.
Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Entities:  

Keywords:  CRISPR/Cas9; Schizosaccharomyces pombe; fluoride channel; plasmid

Mesh:

Substances:

Year:  2016        PMID: 27327046      PMCID: PMC5363073          DOI: 10.1002/yea.3178

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  24 in total

1.  Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.

Authors:  J Nakayama ; J C Rice; B D Strahl; C D Allis; S I Grewal
Journal:  Science       Date:  2001-03-15       Impact factor: 47.728

2.  Genetic control of cell size at cell division in yeast.

Authors:  P Nurse
Journal:  Nature       Date:  1975-08-14       Impact factor: 49.962

3.  Eukaryotic resistance to fluoride toxicity mediated by a widespread family of fluoride export proteins.

Authors:  Sanshu Li; Kathryn D Smith; Jared H Davis; Patricia B Gordon; Ronald R Breaker; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-30       Impact factor: 11.205

4.  Control of cell size at division in fission yeast by a growth-modulated size control over nuclear division.

Authors:  P Fantes; P Nurse
Journal:  Exp Cell Res       Date:  1977-07       Impact factor: 3.905

5.  Characterization of dip1p reveals a switch in Arp2/3-dependent actin assembly for fission yeast endocytosis.

Authors:  Roshni Basu; Fred Chang
Journal:  Curr Biol       Date:  2011-05-27       Impact factor: 10.834

6.  Yeast Fex1p Is a Constitutively Expressed Fluoride Channel with Functional Asymmetry of Its Two Homologous Domains.

Authors:  Kathryn D Smith; Patricia B Gordon; Alberto Rivetta; Kenneth E Allen; Tetyana Berbasova; Clifford Slayman; Scott A Strobel
Journal:  J Biol Chem       Date:  2015-06-08       Impact factor: 5.157

7.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

8.  Phosphatidylethanolamine is required for normal cell morphology and cytokinesis in the fission yeast Schizosaccharomyces pombe.

Authors:  Jun Luo; Yasuhiro Matsuo; Galina Gulis; Haylee Hinz; Jana Patton-Vogt; Stevan Marcus
Journal:  Eukaryot Cell       Date:  2009-03-13

9.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

10.  Ultrastructure of the yeast actin cytoskeleton and its association with the plasma membrane.

Authors:  J Mulholland; D Preuss; A Moon; A Wong; D Drubin; D Botstein
Journal:  J Cell Biol       Date:  1994-04       Impact factor: 10.539

View more
  11 in total

Review 1.  Genome editing systems across yeast species.

Authors:  Zhiliang Yang; Mark Blenner
Journal:  Curr Opin Biotechnol       Date:  2020-10-01       Impact factor: 9.740

Review 2.  Membrane Exporters of Fluoride Ion.

Authors:  Benjamin C McIlwain; Michal T Ruprecht; Randy B Stockbridge
Journal:  Annu Rev Biochem       Date:  2021-01-25       Impact factor: 27.258

3.  A CRISPR/Cas9-based method and primer design tool for seamless genome editing in fission yeast.

Authors:  María Rodríguez-López; Cristina Cotobal; Oscar Fernández-Sánchez; Natalia Borbarán Bravo; Risky Oktriani; Heike Abendroth; Dardan Uka; Mimoza Hoti; Jin Wang; Mikel Zaratiegui; Jürg Bähler
Journal:  Wellcome Open Res       Date:  2017-05-05

4.  Fluoride export (FEX) proteins from fungi, plants and animals are 'single barreled' channels containing one functional and one vestigial ion pore.

Authors:  Tetyana Berbasova; Sunitha Nallur; Taylor Sells; Kathryn D Smith; Patricia B Gordon; Susan Lori Tausta; Scott A Strobel
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

Review 5.  CRISPR/Cas system for yeast genome engineering: advances and applications.

Authors:  Vratislav Stovicek; Carina Holkenbrink; Irina Borodina
Journal:  FEMS Yeast Res       Date:  2017-08-01       Impact factor: 2.796

6.  A Cloning-Free Method for CRISPR/Cas9-Mediated Genome Editing in Fission Yeast.

Authors:  Xiao-Ran Zhang; Jia-Bei He; Yi-Zheng Wang; Li-Lin Du
Journal:  G3 (Bethesda)       Date:  2018-05-31       Impact factor: 3.154

7.  Nutrient-dependent control of RNA polymerase II elongation rate regulates specific gene expression programs by alternative polyadenylation.

Authors:  Carlo Yague-Sanz; Yann Vanrobaeys; Ronan Fernandez; Maxime Duval; Marc Larochelle; Jude Beaudoin; Julien Berro; Simon Labbé; Pierre-Étienne Jacques; François Bachand
Journal:  Genes Dev       Date:  2020-06-04       Impact factor: 11.361

8.  Single-molecule turnover dynamics of actin and membrane coat proteins in clathrin-mediated endocytosis.

Authors:  Michael M Lacy; David Baddeley; Julien Berro
Journal:  Elife       Date:  2019-12-19       Impact factor: 8.140

9.  Microtubule nucleation promoters Mto1 and Mto2 regulate cytokinesis in fission yeast.

Authors:  Samantha E R Dundon; Thomas D Pollard
Journal:  Mol Biol Cell       Date:  2020-06-10       Impact factor: 4.138

10.  SpEDIT: A fast and efficient CRISPR/Cas9 method for fission yeast.

Authors:  Sito Torres-Garcia; Lorenza Di Pompeo; Luke Eivers; Baptiste Gaborieau; Sharon A White; Alison L Pidoux; Paulina Kanigowska; Imtiyaz Yaseen; Yizhi Cai; Robin C Allshire
Journal:  Wellcome Open Res       Date:  2020-11-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.