Literature DB >> 27325240

Learning from the Leaders: Gene Regulation by the Transcription Termination Factor Rho.

Michelle A Kriner1, Anastasia Sevostyanova2, Eduardo A Groisman3.   

Abstract

The RNA helicase Rho triggers 20-30% of transcription termination events in bacteria. While Rho is associated with most transcription elongation complexes, it only promotes termination of a subset. Recent studies of individual Rho-dependent terminators located within the 5' leader regions of bacterial mRNAs have identified novel mechanisms that govern Rho target specificity and have revealed unanticipated physiological functions for Rho. In particular, the multistep nature of Rho-dependent termination enables regulatory input from determinants beyond the sequence of the Rho loading site, and allows a given Rho-dependent terminator to respond to multiple signals. Further, the unique position of Rho as a sensor of cellular translation has been exploited to regulate the transcription of genes required for protein synthesis, including those specifying Mg(2+) transporters.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27325240      PMCID: PMC4967001          DOI: 10.1016/j.tibs.2016.05.012

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  83 in total

1.  Genetic regulatory mechanisms in the synthesis of proteins.

Authors:  F JACOB; J MONOD
Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

2.  Riboswitch control of Rho-dependent transcription termination.

Authors:  Kerry Hollands; Sergey Proshkin; Svetlana Sklyarova; Vitaly Epshtein; Alexander Mironov; Evgeny Nudler; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

Review 3.  Regulation of magnesium homeostasis and transport in mammalian cells.

Authors:  Andrea Romani
Journal:  Arch Biochem Biophys       Date:  2006-08-07       Impact factor: 4.013

4.  Transcription termination factor rho prefers catalytically active elongation complexes for releasing RNA.

Authors:  Dipak Dutta; Jisha Chalissery; Ranjan Sen
Journal:  J Biol Chem       Date:  2008-05-15       Impact factor: 5.157

5.  A stepwise 2'-hydroxyl activation mechanism for the bacterial transcription termination factor Rho helicase.

Authors:  Annie Schwartz; Makhlouf Rabhi; Frédérique Jacquinot; Emmanuel Margeat; A Rachid Rahmouni; Marc Boudvillain
Journal:  Nat Struct Mol Biol       Date:  2009-11-15       Impact factor: 15.369

Review 6.  Terminator still moving forward: expanding roles for Rho factor.

Authors:  Marc Boudvillain; Nara Figueroa-Bossi; Lionello Bossi
Journal:  Curr Opin Microbiol       Date:  2013-01-21       Impact factor: 7.934

7.  Termination factor for RNA synthesis.

Authors:  J W Roberts
Journal:  Nature       Date:  1969-12-20       Impact factor: 49.962

8.  Suppression of transcription termination by phage lambda.

Authors:  D F Ward; M E Gottesman
Journal:  Science       Date:  1982-05-28       Impact factor: 47.728

Review 9.  Rho-dependent transcription termination: more questions than answers.

Authors:  Sharmistha Banerjee; Jisha Chalissery; Irfan Bandey; Ranjan Sen
Journal:  J Microbiol       Date:  2006-02       Impact factor: 3.422

10.  Interactions of Escherichia coli transcription termination factor rho with RNA. I. Binding stoichiometries and free energies.

Authors:  J A McSwiggen; D G Bear; P H von Hippel
Journal:  J Mol Biol       Date:  1988-02-20       Impact factor: 5.469

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  21 in total

Review 1.  Regulation of Bacterial Gene Expression by Transcription Attenuation.

Authors:  Charles L Turnbough
Journal:  Microbiol Mol Biol Rev       Date:  2019-07-03       Impact factor: 11.056

2.  Mg2+-dependent translational speed bump acts to regulate gene transcription.

Authors:  Kelly T Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-19       Impact factor: 11.205

Review 3.  Maestro of regulation: Riboswitches orchestrate gene expression at the levels of translation, transcription and mRNA decay.

Authors:  Laurène Bastet; Pierre Turcotte; Joseph T Wade; Daniel A Lafontaine
Journal:  RNA Biol       Date:  2018-04-03       Impact factor: 4.652

Review 4.  Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology.

Authors:  Indra Bervoets; Daniel Charlier
Journal:  FEMS Microbiol Rev       Date:  2019-05-01       Impact factor: 16.408

Review 5.  Rho-dependent transcription termination: a revisionist view.

Authors:  Zhitai Hao; Vladimir Svetlov; Evgeny Nudler
Journal:  Transcription       Date:  2021-10-27

6.  Exploiting phage strategies to modulate bacterial transcription.

Authors:  Markus C Wahl; Ranjan Sen
Journal:  Transcription       Date:  2019-10-30

7.  The Division Defect of a Bacillus subtilis minD noc Double Mutant Can Be Suppressed by Spx-Dependent and Spx-Independent Mechanisms.

Authors:  Yuanchen Yu; Felix Dempwolff; Reid T Oshiro; Frederico J Gueiros-Filho; Stephen C Jacobson; Daniel B Kearns
Journal:  J Bacteriol       Date:  2021-08-20       Impact factor: 3.490

8.  Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping.

Authors:  Philip P Adams; Gabriele Baniulyte; Caroline Esnault; Kavya Chegireddy; Navjot Singh; Molly Monge; Ryan K Dale; Gisela Storz; Joseph T Wade
Journal:  Elife       Date:  2021-01-18       Impact factor: 8.140

Review 9.  Bacterial RNA Polymerase-DNA Interaction-The Driving Force of Gene Expression and the Target for Drug Action.

Authors:  Jookyung Lee; Sergei Borukhov
Journal:  Front Mol Biosci       Date:  2016-11-09

10.  Identification of regulatory targets for the bacterial Nus factor complex.

Authors:  Gabriele Baniulyte; Navjot Singh; Courtney Benoit; Richard Johnson; Robert Ferguson; Mauricio Paramo; Anne M Stringer; Ashley Scott; Pascal Lapierre; Joseph T Wade
Journal:  Nat Commun       Date:  2017-12-11       Impact factor: 14.919

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