| Literature DB >> 27317257 |
Vivian M Raeven1,2, Simone M C Spoorenberg3, Wim G Boersma4, Ewoudt M W van de Garde5,6, Suzanne C Cannegieter7, G P Paul Voorn8, Willem Jan W Bos1, Jim E van Steenbergen2,9.
Abstract
BACKGROUND: Microorganisms causing community-acquired pneumonia (CAP) can be categorised into viral, typical and atypical (Legionella species, Coxiella burnetii, Mycoplasma pneumoniae, and Chlamydia species). Extensive microbiological testing to identify the causative microorganism is not standardly recommended, and empiric treatment does not always cover atypical pathogens. In order to optimize epidemiologic knowledge of CAP and to improve empiric antibiotic choice, we investigated whether atypical microorganisms are associated with a particular season or with the patient characteristics age, gender, or chronic obstructive pulmonary disease (COPD).Entities:
Keywords: Aetiology; Atypical pathogens; Community-acquired pneumonia; Demography; Pneumonia
Mesh:
Substances:
Year: 2016 PMID: 27317257 PMCID: PMC4912822 DOI: 10.1186/s12879-016-1641-9
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Baseline characteristics and aetiology per study of all 980 patients
| All patients | Meijvis [ | Endeman [ | Snijders [ | Vd Eerden [ | |
|---|---|---|---|---|---|
| Demographic characteristics | No. | No. | No. | No. | No. |
| Male gender (%) | 561 (57.2) | 171 (56.3) | 124 (61.7) | 124 (58.2) | 142 (54.2) |
| Age in years, median (IQR) | 67 (52–78) | 66.5 (51–79) | 68 (51.5–76) | 65 (51.5–80) | 68 (52–78) |
| COPD (%) | 236 (24.2) | 34 (11.2) | 64 (31.8) | 43 (20.3) | 95 (36.7) |
| Smoking (%) | 211 (28.6) | 81 (29.2) | a | 56 (26.8) | 74 (29.5) |
| Nursing home resident (%) | 29 (3.0) | 16 (5.3) | 3 (1.5) | 4 (1.9) | 6 (2.3) |
| PSI class IV or V (%) | 435 (44.4) | 142 (46.7) | 84 (41.8) | 94 (44.1) | 115 (43.9) |
| 30-Day mortality (%) | 67 (6.8) | 18 (5.9) | 8 (4.0) | 12 (5.6) | 29 (11.1) |
| Aetiology (%) | |||||
|
| 282 (28.8) | 64 (21.1) | 60 (29.9) | 78 (36.6) | 80 (30.5) |
|
| 55 (5.6) | 9 (3.0) | 18 (9.0) | 7 (3.3) | 21 (8.0) |
|
| 42 (4.3) | 12 (3.9) | 8 (4.0) | 8 (3.8) | 14 (5.3) |
|
| 31 (3.2) | 5 (1.6) | 4 (2.0) | 13 (6.1) | 9 (3.4) |
|
| 28 (2.9) | 27 (8.9) | 1 (0.5) | 0 (0) | 0 (0) |
| Influenza A/B virus | 25 (2.6) | 7 (2.3) | 6 (3.0) | 3 (1.4) | 9 (3.4) |
|
| 21 (2.1) | 3 (1.0) | 6 (3.0) | 2 (0.9) | 10 (3.8) |
|
| 16 (1.6) | 14 (4.6) | 2 (1.0) | 0 (0) | 0 (0) |
| Adenovirus | 6 (0.6) | 1 (0.3) | 1 (0.5) | 2 (0.9) | 2 (0.8) |
| Other bacteria | 38 (3.9) | 15 (4.9) | 12 (6.0) | 5 (2.3) | 6 (2.3) |
| Other viruses | 21 (2.1) | 11 (3.6) | 9 (4.5) | 0 (0) | 1 (0.4) |
| Unidentified | 415 (42.3) | 136 (44.7) | 74 (36.8) | 95 (44.6) | 110 (42.0) |
Results are given as number and percentage, unless mentioned otherwise
Abbreviations: COPD chronic obstructive pulmonary disease, ICU intensive care unit, IQR interquartile range, PSI pneumonia severity index
aIndicates all missing values
Fig. 1Number of atypical pathogens per year of inclusion
Demographic characteristics and outcome of 980 patients hospitalised with community-acquired pneumonia
| Total | Atypical | Other pathogen | Unknown | |
|---|---|---|---|---|
| Male gender (%) | 561 (57.2) | 77 (65.8) | 250 (55.8) | 234 (56.4) |
| Age in years (IQR) | 67 (52–78) | 52 (41.5–67) | 68 (54–78) | 69 (55–80)* |
| COPD (%)a | 236 (24.1) | 9 (7.7) | 135 (30.3) | 92 (22.3)* |
| Smoking (%)b | 211 (28.6) | 38 (40.4) | 93 (29.3) | 80 (24.5)* |
| Nursing home resident (%)c | 29 (3.0) | 0 (0.0) | 8 (1.8) | 21 (5.1)* |
| PSI class IV or V (%) | 435 (44.4) | 38 (32.5) | 219 (48.9) | 178 (42.9)* |
| 30-Day mortality (%) | 67 (6.8) | 6 (5.1) | 33 (7.4) | 28 (6.7) |
Results are given as number (percentage) or median (interquartile range)
Abbreviations: COPD chronic obstructive pulmonary disease, ICU intensive care unit, IQR interquartile range, PSI pneumonia severity index
*Indicates a significant difference between the three groups (p-value <0.05). aIndicates four missing values, bIndicates 243 missing values, cIndicates 10 missing values
Fig. 2Percentage of atypical pathogen. a Distribution of pathogens during the different seasons. b Distribution of pathogens related to age. c Distribution of pathogens within season for patients < 60 years. d Distribution of pathogens within season for patients ≥ 60 years
Univariable and multivariable logistic regression analysis of atypical versus other pathogens with cases with unknown aetiology excluded
| Univariable analysis | Multivariable analysis | |||
|---|---|---|---|---|
| Parameter | OR | 95 % CI | OR | 95 % CI |
| Non-respiratory season | 4.1 | 2.67–6.35** | 4.3 | 2.68–6.84** |
| Age <60 years | 3.6 | 2.35–5.50** | 2.9 | 1.83–4.66** |
| Male gender | 1.5 | 1.00–2.33 | 1.7 | 1.06–2.71* |
| COPDa | 0.2 | 0.09–0.39** | 0.2 | 0.12–0.52** |
| Smokingb | 1.6 | 1.01–2.64* | Excluded | |
Abbreviations: OR odds ratio, CI confidence interval, COPD chronic obstructive pulmonary disease
*Indicates a p-value <0.05; **Indicates a p-value < 0.001
aIndicates four missing values; bIndicates 243 missing values
Three multivariable logistic regression sensitivity analyses: 1) Excluding viral pathogens; 2) Cases with unknown aetiology being indicated as not atypical; and 3) Cases with unknown aetiology being indicated as atypical
| 1) Atypical vs. other (viral cases excluded) | 2) Atypical vs. other and unknown | 3) Atypical and unknown vs. other | ||||
|---|---|---|---|---|---|---|
| Parameter | OR | 95 % CI | OR | 95 % CI | OR | 95 % CI |
| Non-respiratory season | 4.2 | 2.58–6.72** | 3.0 | 1.95–4.47** | 2.0 | 1.47–2.76** |
| Age <60 years | 2.7 | 1.69–4.36** | 3.0 | 1.97–4.59** | 1.0 | 0.75–1.35 |
| Male gender | 1.7 | 1.09–2.81* | 1.6 | 1.02–2.41* | 1.2 | 0.91–1.56 |
| COPDa | 0.2 | 0.11–0.48** | 0.3 | 0.15–0.65* | 0.5 | 0.37–0.70** |
Abbreviations: OR odds ratio, CI confidence interval, COPD chronic obstructive pulmonary disease
*Indicates a p-value <0.05; **Indicates a p-value < 0.001
aIndicates four missing values
Two multivariable logistic regression sensitivity analyses with: 1) Outbreaks excluded; 2) All Legionella cases excluded; 3) Only two studies that used PCR methods
| 1) Outbreaks excluded | 2) | 3) PCR based studies | ||||
|---|---|---|---|---|---|---|
| OR | 95 % CI | OR | 95 % CI | OR | 95 % CI | |
| Non-respiratory season | 4.2 | 2.38–7.30** | 5.4 | 3.02–9.64** | 8.3 | 4.35–15.80** |
| Age <60 years | 4.2 | 2.38–7.30** | 6.1 | 3.24–11.55** | 3.7 | 1.93–7.06** |
| Male gender | 1.8 | 1.02–3.05* | 1.7 | 0.94–3.00 | 1.4 | 0.74–2.68 |
| COPDa | 0.2 | 0.08–0.54* | 0.1 | 0.04–0.51* | 0.2 | 0.07–0.71* |
Abbreviations: OR odds ratio, CI confidence interval, COPD chronic obstructive pulmonary disease
*Indicates a p-value <0.05; **Indicates a p-value < 0.001
aIndicates four missing values