Literature DB >> 20956531

Identification and characterization of oxalate oxidoreductase, a novel thiamine pyrophosphate-dependent 2-oxoacid oxidoreductase that enables anaerobic growth on oxalate.

Elizabeth Pierce1, Donald F Becker, Stephen W Ragsdale.   

Abstract

Moorella thermoacetica is an anaerobic acetogen, a class of bacteria that is found in the soil, the animal gastrointestinal tract, and the rumen. This organism engages the Wood-Ljungdahl pathway of anaerobic CO(2) fixation for heterotrophic or autotrophic growth. This paper describes a novel enzyme, oxalate oxidoreductase (OOR), that enables M. thermoacetica to grow on oxalate, which is produced in soil and is a common component of kidney stones. Exposure to oxalate leads to the induction of three proteins that are subunits of OOR, which oxidizes oxalate coupled to the production of two electrons and CO(2) or bicarbonate. Like other members of the 2-oxoacid:ferredoxin oxidoreductase family, OOR contains thiamine pyrophosphate and three [Fe(4)S(4)] clusters. However, unlike previously characterized members of this family, OOR does not use coenzyme A as a substrate. Oxalate is oxidized with a k(cat) of 0.09 s(-1) and a K(m) of 58 μM at pH 8. OOR also oxidizes a few other 2-oxoacids (which do not induce OOR) also without any requirement for CoA. The enzyme transfers its reducing equivalents to a broad range of electron acceptors, including ferredoxin and the nickel-dependent carbon monoxide dehydrogenase. In conjunction with the well characterized Wood-Ljungdahl pathway, OOR should be sufficient for oxalate metabolism by M. thermoacetica, and it constitutes a novel pathway for oxalate metabolism.

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Year:  2010        PMID: 20956531      PMCID: PMC3003350          DOI: 10.1074/jbc.M110.155739

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  Pyruvate ferredoxin oxidoreductase from the hyperthermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decarboxylase.

Authors:  K Ma; A Hutchins; S J Sung; M W Adams
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-02       Impact factor: 11.205

2.  Oxalate- and Glyoxylate-Dependent Growth and Acetogenesis by Clostridium thermoaceticum.

Authors:  S L Daniel; H L Drake
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

3.  Purification and characterization of oxalyl-coenzyme A decarboxylase from Oxalobacter formigenes.

Authors:  A L Baetz; M J Allison
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

4.  On the nature of the spin coupling between the iron-sulfur clusters in the eight-iron ferredoxins.

Authors:  R Mathews; S Charlton; R H Sands; G Palmer
Journal:  J Biol Chem       Date:  1974-07-10       Impact factor: 5.157

5.  Fluorometric determination of thiamine and its mono-, di-, and triphosphate esters.

Authors:  H K Penttinen
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

6.  Influence of nitrate on oxalate- and glyoxylate-dependent growth and acetogenesis by Moorella thermoacetica.

Authors:  Corinna Seifritz; Jürgen M Fröstl; Harold L Drake; Steven L Daniel
Journal:  Arch Microbiol       Date:  2002-09-04       Impact factor: 2.552

7.  Nitrate-dependent regulation of acetate biosynthesis and nitrate respiration by Clostridium thermoaceticum.

Authors:  A F Arendsen; M Q Soliman; S W Ragsdale
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

8.  Oxalate metabolism by the acetogenic bacterium Moorella thermoacetica.

Authors:  Steven L Daniel; Christine Pilsl; Harold L Drake
Journal:  FEMS Microbiol Lett       Date:  2004-02-09       Impact factor: 2.742

9.  Purifications and characterizations of a ferredoxin and its related 2-oxoacid:ferredoxin oxidoreductase from the hyperthermophilic archaeon, Sulfolobus solfataricus P1.

Authors:  Young-Jun Park; Chul-Bae Yoo; Soo Young Choi; Hee-Bong Lee
Journal:  J Biochem Mol Biol       Date:  2006-01-31

10.  Properties of 2-oxoglutarate:ferredoxin oxidoreductase from Thauera aromatica and its role in enzymatic reduction of the aromatic ring.

Authors:  Edith Dörner; Matthias Boll
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

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  10 in total

1.  One-carbon chemistry of oxalate oxidoreductase captured by X-ray crystallography.

Authors:  Marcus I Gibson; Percival Yang-Ting Chen; Aileen C Johnson; Elizabeth Pierce; Mehmet Can; Stephen W Ragsdale; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

Review 2.  Radical reactions of thiamin pyrophosphate in 2-oxoacid oxidoreductases.

Authors:  George H Reed; Stephen W Ragsdale; Steven O Mansoorabadi
Journal:  Biochim Biophys Acta       Date:  2011-12-08

3.  Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase from Moorella thermoacetica.

Authors:  Percival Yang-Ting Chen; Heather Aman; Mehmet Can; Stephen W Ragsdale; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

4.  Electron bifurcation involved in the energy metabolism of the acetogenic bacterium Moorella thermoacetica growing on glucose or H2 plus CO2.

Authors:  Haiyan Huang; Shuning Wang; Johanna Moll; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2012-05-11       Impact factor: 3.490

5.  The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism.

Authors:  Marcus I Gibson; Edward J Brignole; Elizabeth Pierce; Mehmet Can; Stephen W Ragsdale; Catherine L Drennan
Journal:  Biochemistry       Date:  2015-06-24       Impact factor: 3.162

6.  The pyruvate:ferredoxin oxidoreductase of the thermophilic acetogen, Thermoanaerobacter kivui.

Authors:  Alexander Katsyv; Marie Charlotte Schoelmerich; Mirko Basen; Volker Müller
Journal:  FEBS Open Bio       Date:  2021-04-04       Impact factor: 2.693

Review 7.  A structural phylogeny for understanding 2-oxoacid oxidoreductase function.

Authors:  Marcus I Gibson; Percival Yang-Ting Chen; Catherine L Drennan
Journal:  Curr Opin Struct Biol       Date:  2016-06-14       Impact factor: 6.809

8.  Identification and Characterization of microRNAs during Maize Grain Filling.

Authors:  Xining Jin; Zhiyuan Fu; Panqing Lv; Qian Peng; Dong Ding; Weihua Li; Jihua Tang
Journal:  PLoS One       Date:  2015-05-07       Impact factor: 3.240

9.  Acetone utilization by sulfate-reducing bacteria: draft genome sequence of Desulfococcus biacutus and a proteomic survey of acetone-inducible proteins.

Authors:  Olga B Gutiérrez Acosta; David Schleheck; Bernhard Schink
Journal:  BMC Genomics       Date:  2014-07-11       Impact factor: 3.969

10.  Properties of Intermediates in the Catalytic Cycle of Oxalate Oxidoreductase and Its Suicide Inactivation by Pyruvate.

Authors:  Elizabeth Pierce; Steven O Mansoorabadi; Mehmet Can; George H Reed; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2017-05-23       Impact factor: 3.162

  10 in total

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