Literature DB >> 27312108

Molecular insights into RBR E3 ligase ubiquitin transfer mechanisms.

Katja K Dove1, Benjamin Stieglitz2, Emily D Duncan1, Katrin Rittinger2, Rachel E Klevit3.   

Abstract

RING-in-between-RING (RBR) ubiquitin (Ub) ligases are a distinct class of E3s, defined by a RING1 domain that binds E2 Ub-conjugating enzyme and a RING2 domain that contains an active site cysteine similar to HECT-type E3s. Proposed to function as RING/HECT hybrids, details regarding the Ub transfer mechanism used by RBRs have yet to be defined. When paired with RING-type E3s, E2s perform the final step of Ub ligation to a substrate. In contrast, when paired with RBR E3s, E2s must transfer Ub onto the E3 to generate a E3~Ub intermediate. We show that RBRs utilize two strategies to ensure transfer of Ub from the E2 onto the E3 active site. First, RING1 domains of HHARI and RNF144 promote open E2~Ubs. Second, we identify a Ub-binding site on HHARI RING2 important for its recruitment to RING1-bound E2~Ub. Mutations that ablate Ub binding to HHARI RING2 also decrease RBR ligase activity, consistent with RING2 recruitment being a critical step for the RBR Ub transfer mechanism. Finally, we demonstrate that the mechanism defined here is utilized by a variety of RBRs.
© 2016 The Authors.

Entities:  

Keywords:  HHARI; HOIP; Parkin; RBR; ubiquitin E3 ligase

Mesh:

Substances:

Year:  2016        PMID: 27312108      PMCID: PMC4967960          DOI: 10.15252/embr.201642641

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  55 in total

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Authors:  H Matsumine; M Saito; S Shimoda-Matsubayashi; H Tanaka; A Ishikawa; Y Nakagawa-Hattori; M Yokochi; T Kobayashi; S Igarashi; H Takano; K Sanpei; R Koike; H Mori; T Kondo; Y Mizutani; A A Schäffer; Y Yamamura; S Nakamura; S Kuzuhara; S Tsuji; Y Mizuno
Journal:  Am J Hum Genet       Date:  1997-03       Impact factor: 11.025

2.  Parkin mitochondrial translocation is achieved through a novel catalytic activity coupled mechanism.

Authors:  Xinde Zheng; Tony Hunter
Journal:  Cell Res       Date:  2013-05-14       Impact factor: 25.617

3.  Human Homolog of Drosophila Ariadne (HHARI) is a marker of cellular proliferation associated with nuclear bodies.

Authors:  Fatima Elmehdawi; Gabrielle Wheway; Katarzyna Szymanska; Matthew Adams; Alec S High; Colin A Johnson; Philip A Robinson
Journal:  Exp Cell Res       Date:  2012-10-08       Impact factor: 3.905

4.  SHARPIN is a component of the NF-κB-activating linear ubiquitin chain assembly complex.

Authors:  Fuminori Tokunaga; Tomoko Nakagawa; Masaki Nakahara; Yasushi Saeki; Masami Taniguchi; Shin-ichi Sakata; Keiji Tanaka; Hiroyasu Nakano; Kazuhiro Iwai
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

5.  1H, 13C and 15N resonance assignments for the human E2 conjugating enzyme, UbcH7.

Authors:  Stephanie A Serniwka; Gary S Shaw
Journal:  Biomol NMR Assign       Date:  2007-12-28       Impact factor: 0.746

6.  RNF144A, an E3 ubiquitin ligase for DNA-PKcs, promotes apoptosis during DNA damage.

Authors:  Shiuh-Rong Ho; Christina S Mahanic; Yu-Ju Lee; Weei-Chin Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-16       Impact factor: 11.205

7.  PINK1 drives Parkin self-association and HECT-like E3 activity upstream of mitochondrial binding.

Authors:  Michael Lazarou; Derek P Narendra; Seok Min Jin; Ephrem Tekle; Soojay Banerjee; Richard J Youle
Journal:  J Cell Biol       Date:  2013-01-14       Impact factor: 10.539

8.  TRIAD1 and HHARI bind to and are activated by distinct neddylated Cullin-RING ligase complexes.

Authors:  Ian R Kelsall; David M Duda; Jennifer L Olszewski; Kay Hofmann; Axel Knebel; Frédéric Langevin; Nicola Wood; Melanie Wightman; Brenda A Schulman; Arno F Alpi
Journal:  EMBO J       Date:  2013-09-27       Impact factor: 11.598

Review 9.  E2 enzymes: more than just middle men.

Authors:  Mikaela D Stewart; Tobias Ritterhoff; Rachel E Klevit; Peter S Brzovic
Journal:  Cell Res       Date:  2016-03-22       Impact factor: 25.617

10.  Structure of HHARI, a RING-IBR-RING ubiquitin ligase: autoinhibition of an Ariadne-family E3 and insights into ligation mechanism.

Authors:  David M Duda; Jennifer L Olszewski; Jonathan P Schuermann; Igor Kurinov; Darcie J Miller; Amanda Nourse; Arno F Alpi; Brenda A Schulman
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

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  38 in total

1.  Two functionally distinct E2/E3 pairs coordinate sequential ubiquitination of a common substrate in Caenorhabditis elegans development.

Authors:  Katja K Dove; Hilary A Kemp; Kristin R Di Bona; Katherine H Reiter; Luke J Milburn; David Camacho; David S Fay; Dana L Miller; Rachel E Klevit
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

2.  UbMES and UbFluor: Novel probes for ring-between-ring (RBR) E3 ubiquitin ligase PARKIN.

Authors:  Sungjin Park; Peter K Foote; David T Krist; Sarah E Rice; Alexander V Statsyuk
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

3.  Mechanism of catalysis, E2 recognition, and autoinhibition for the IpaH family of bacterial E3 ubiquitin ligases.

Authors:  Alexander F A Keszei; Frank Sicheri
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

4.  The ubiquitin ligase SspH1 from Salmonella uses a modular and dynamic E3 domain to catalyze substrate ubiquitylation.

Authors:  Matt Cook; Scott P Delbecq; Thomas P Schweppe; Miklos Guttman; Rachel E Klevit; Peter S Brzovic
Journal:  J Biol Chem       Date:  2018-11-20       Impact factor: 5.157

5.  Ubiquitination is required for the initial removal of paternal organelles in C. elegans.

Authors:  Paola Molina; Yunki Lim; Lynn Boyd
Journal:  Dev Biol       Date:  2019-05-30       Impact factor: 3.582

6.  RBR-Type E3 Ligases and the Ubiquitin-Conjugating Enzyme UBC26 Regulate Abscisic Acid Receptor Levels and Signaling.

Authors:  Maria Angeles Fernandez; Borja Belda-Palazon; Jose Julian; Alberto Coego; Jorge Lozano-Juste; Sabrina Iñigo; Lesia Rodriguez; Eduardo Bueso; Alain Goossens; Pedro L Rodriguez
Journal:  Plant Physiol       Date:  2019-11-07       Impact factor: 8.340

Review 7.  RING-Between-RING E3 Ligases: Emerging Themes amid the Variations.

Authors:  Katja K Dove; Rachel E Klevit
Journal:  J Mol Biol       Date:  2017-08-19       Impact factor: 5.469

8.  Recruitment of Ubiquitin within an E2 Chain Elongation Complex.

Authors:  Benjamin W Cook; Rachel E Lacoursiere; Gary S Shaw
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033

9.  In silico modeling of the cryptic E2∼ubiquitin-binding site of E6-associated protein (E6AP)/UBE3A reveals the mechanism of polyubiquitin chain assembly.

Authors:  Virginia P Ronchi; Elizabeth D Kim; Christopher M Summa; Jennifer M Klein; Arthur L Haas
Journal:  J Biol Chem       Date:  2017-09-18       Impact factor: 5.157

10.  UbFluor: A Fluorescent Thioester to Monitor HECT E3 Ligase Catalysis.

Authors:  David T Krist; Peter K Foote; Alexander V Statsyuk
Journal:  Curr Protoc Chem Biol       Date:  2017-03-02
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