Literature DB >> 27303894

Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase.

Yuichi Nishitani1, Jan Robert Simons2, Tamotsu Kanai2, Haruyuki Atomi2, Kunio Miki1.   

Abstract

The TK2203 protein from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1 (262 residues, 29 kDa) is a putative extradiol dioxygenase catalyzing the cleavage of C-C bonds in catechol derivatives. It contains three metal-binding residues, but has no significant sequence similarity to proteins for which structures have been determined. Here, the first crystal structure of the TK2203 protein was determined at 1.41 Å resolution to investigate its functional role. Structure analysis reveals that this protein shares the same fold and catalytic residues as other extradiol dioxygenases, strongly suggesting the same enzymatic activity. Furthermore, the important region contributing to substrate selectivity is discussed.

Entities:  

Keywords:  SIRAS; TK2203; Thermococcus kodakarensis; archaea; aromatic compound degradation; homodimer; nonhaem iron

Mesh:

Substances:

Year:  2016        PMID: 27303894      PMCID: PMC4909241          DOI: 10.1107/S2053230X16006920

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  23 in total

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Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

5.  An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2.

Authors:  A Kita; S Kita; I Fujisawa; K Inaka; T Ishida; K Horiike; M Nozaki; K Miki
Journal:  Structure       Date:  1999-01-15       Impact factor: 5.006

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Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

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Authors:  Frédéric H Vaillancourt; Jeffrey T Bolin; Lindsay D Eltis
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Authors:  T C Terwilliger; J Berendzen
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Authors:  S Harayama; M Kok; E L Neidle
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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  2 in total

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Review 2.  An overview of 25 years of research on Thermococcus kodakarensis, a genetically versatile model organism for archaeal research.

Authors:  Naeem Rashid; Mehwish Aslam
Journal:  Folia Microbiol (Praha)       Date:  2019-07-08       Impact factor: 2.099

  2 in total

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