Literature DB >> 27296429

Use of Whole Genome Sequencing and Patient Interviews To Link a Case of Sporadic Listeriosis to Consumption of Prepackaged Lettuce.

K A Jackson1, S Stroika2, L S Katz2, J Beal3, E Brandt4, C Nadon5, A Reimer5, B Major6, A Conrad7, C Tarr2, B R Jackson2, R K Mody2.   

Abstract

We report on a case of listeriosis in a patient who probably consumed a prepackaged romaine lettuce-containing product recalled for Listeria monocytogenes contamination. Although definitive epidemiological information demonstrating exposure to the specific recalled product was lacking, the patient reported consumption of a prepackaged romaine lettuce-containing product of either the recalled brand or a different brand. A multinational investigation found that patient and food isolates from the recalled product were indistinguishable by pulsed-field gel electrophoresis and were highly related by whole genome sequencing, differing by four alleles by whole genome multilocus sequence typing and by five high-quality single nucleotide polymorphisms, suggesting a common source. To our knowledge, this is the first time prepackaged lettuce has been identified as a likely source for listeriosis. This investigation highlights the power of whole genome sequencing, as well as the continued need for timely and thorough epidemiological exposure data to identify sources of foodborne infections.

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Year:  2016        PMID: 27296429      PMCID: PMC4910634          DOI: 10.4315/0362-028X.JFP-15-384

Source DB:  PubMed          Journal:  J Food Prot        ISSN: 0362-028X            Impact factor:   2.077


  13 in total

1.  VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

Authors:  Daniel C Koboldt; Ken Chen; Todd Wylie; David E Larson; Michael D McLellan; Elaine R Mardis; George M Weinstock; Richard K Wilson; Li Ding
Journal:  Bioinformatics       Date:  2009-06-19       Impact factor: 6.937

2.  Isolation and pulsed-field gel electrophoresis typing of Listeria monocytogenes from modified atmosphere packaged fresh-cut vegetables collected in Ireland.

Authors:  Gillian A Francis; David O'Beirne
Journal:  J Food Prot       Date:  2006-10       Impact factor: 2.077

3.  Epidemic listeriosis--evidence for transmission by food.

Authors:  W F Schlech; P M Lavigne; R A Bortolussi; A C Allen; E V Haldane; A J Wort; A W Hightower; S E Johnson; S H King; E S Nicholls; C V Broome
Journal:  N Engl J Med       Date:  1983-01-27       Impact factor: 91.245

4.  Multistate outbreak of listeriosis associated with cantaloupe.

Authors:  Jeffrey T McCollum; Alicia B Cronquist; Benjamin J Silk; Kelly A Jackson; Katherine A O'Connor; Shaun Cosgrove; Joe P Gossack; Susan S Parachini; Neena S Jain; Paul Ettestad; Mam Ibraheem; Venessa Cantu; Manjiri Joshi; Tracy DuVernoy; Norman W Fogg; James R Gorny; Kathryn M Mogen; Charlotte Spires; Paul Teitell; Lavin A Joseph; Cheryl L Tarr; Maho Imanishi; Karen P Neil; Robert V Tauxe; Barbara E Mahon
Journal:  N Engl J Med       Date:  2013-09-05       Impact factor: 91.245

5.  Hospital-acquired listeriosis outbreak caused by contaminated diced celery--Texas, 2010.

Authors:  Linda Knudson Gaul; Noha H Farag; Trudi Shim; Monica A Kingsley; Benjamin J Silk; Eija Hyytia-Trees
Journal:  Clin Infect Dis       Date:  2012-09-20       Impact factor: 9.079

6.  A computational genomics pipeline for prokaryotic sequencing projects.

Authors:  Andrey O Kislyuk; Lee S Katz; Sonia Agrawal; Matthew S Hagen; Andrew B Conley; Pushkala Jayaraman; Viswateja Nelakuditi; Jay C Humphrey; Scott A Sammons; Dhwani Govil; Raydel D Mair; Kathleen M Tatti; Maria L Tondella; Brian H Harcourt; Leonard W Mayer; I King Jordan
Journal:  Bioinformatics       Date:  2010-06-02       Impact factor: 6.937

Review 7.  Precut prepackaged lettuce: a risk for listeriosis?

Authors:  Irene B Hanning; Michael G Johnson; Steven C Ricke
Journal:  Foodborne Pathog Dis       Date:  2008-12       Impact factor: 3.171

8.  Foodborne illness acquired in the United States--major pathogens.

Authors:  Elaine Scallan; Robert M Hoekstra; Frederick J Angulo; Robert V Tauxe; Marc-Alain Widdowson; Sharon L Roy; Jeffery L Jones; Patricia M Griffin
Journal:  Emerg Infect Dis       Date:  2011-01       Impact factor: 6.883

9.  Notes from the field: listeriosis associated with stone fruit--United States, 2014.

Authors:  Brendan R Jackson; Monique Salter; Cheryl Tarr; Amanda Conrad; Emily Harvey; Lisa Steinbock; Amy Saupe; Alida Sorenson; Lee Katz; Steven Stroika; Kelly A Jackson; Heather Carleton; Zuzana Kucerova; David Melka; Errol Strain; Mickey Parish; Rajal K Mody
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2015-03-20       Impact factor: 17.586

10.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

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  6 in total

Review 1.  Transforming bacterial disease surveillance and investigation using whole-genome sequence to probe the trace.

Authors:  Biao Kan; Haijian Zhou; Pengcheng Du; Wen Zhang; Xin Lu; Tian Qin; Jianguo Xu
Journal:  Front Med       Date:  2018-01-09       Impact factor: 4.592

Review 2.  Metagenomics-enabled microbial surveillance.

Authors:  Karrie K K Ko; Kern Rei Chng; Niranjan Nagarajan
Journal:  Nat Microbiol       Date:  2022-04-01       Impact factor: 17.745

3.  Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.

Authors:  Brendan R Jackson; Cheryl Tarr; Errol Strain; Kelly A Jackson; Amanda Conrad; Heather Carleton; Lee S Katz; Steven Stroika; L Hannah Gould; Rajal K Mody; Benjamin J Silk; Jennifer Beal; Yi Chen; Ruth Timme; Matthew Doyle; Angela Fields; Matthew Wise; Glenn Tillman; Stephanie Defibaugh-Chavez; Zuzana Kucerova; Ashley Sabol; Katie Roache; Eija Trees; Mustafa Simmons; Jamie Wasilenko; Kristy Kubota; Hannes Pouseele; William Klimke; John Besser; Eric Brown; Marc Allard; Peter Gerner-Smidt
Journal:  Clin Infect Dis       Date:  2016-04-18       Impact factor: 9.079

4.  A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica.

Authors:  Anne-Catherine Portmann; Coralie Fournier; Johan Gimonet; Catherine Ngom-Bru; Caroline Barretto; Leen Baert
Journal:  Front Microbiol       Date:  2018-03-14       Impact factor: 5.640

5.  Whole-Genome Sequencing-Based Characterization of 100 Listeria monocytogenes Isolates Collected from Food Processing Environments over a Four-Year Period.

Authors:  Daniel Hurley; Laura Luque-Sastre; Craig T Parker; Steven Huynh; Athmanya K Eshwar; Scott V Nguyen; Nicholas Andrews; Alexandra Moura; Edward M Fox; Kieran Jordan; Angelika Lehner; Roger Stephan; Séamus Fanning
Journal:  mSphere       Date:  2019-08-07       Impact factor: 4.389

6.  Listeriosis associated with pre-prepared sandwich consumption in hospital in England, 2017.

Authors:  J McLauchlin; H Aird; C Amar; G Boyd; A Brindle; T Dallman; K Jalava; A Painset; A Simbo; M Swindlehurst
Journal:  Epidemiol Infect       Date:  2021-09-30       Impact factor: 2.451

  6 in total

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