Literature DB >> 27296233

Realistic models of apparent dynamic changes in resting-state connectivity in somatosensory cortex.

Zhaoyue Shi1,2, Baxter P Rogers3, Li Min Chen3,4, Victoria L Morgan5,3, Arabinda Mishra3, Don M Wilkes6, John C Gore5,3,4,6,7.   

Abstract

Variations over time in resting-state correlations in blood oxygenation level-dependent (BOLD) signals from different cortical areas may indicate changes in brain functional connectivity. However, apparent variations over time may also arise from stationary signals when the sample duration is finite. Recently, a vector autoregressive (VAR) null model has been proposed to simulate real functional magnetic resonance imaging (fMRI) data, which provides a robust stationary model for identifying possible temporal dynamic changes in functional connectivity. In this work, we propose a simpler model that uses a filtered stationary dataset. The filtered stationary model generates statistically stationary time series from random data with a single prescribed correlation coefficient that is calculated as the average over the entire time series. In addition, we propose a dynamic model, which is better able to replicate real fMRI connectivity, estimated from monkey brain studies, than the two stationary models. We compare simulated results using these three models with the behavior of primary somatosensory cortex (S1) networks in anesthetized squirrel monkeys at high field (9.4 T), using a sliding window correlation analysis. We found that at short window sizes, both stationary models reproduced the distribution of correlations of real signals well, but at longer window sizes, a dynamic model reproduced the distribution of correlations of real signals better than the stationary models. While stationary models replicate several features of real data, a close representation of the behavior of resting-state data acquired from somatosensory cortex of non-human primates is obtained only when a dynamic correlation is introduced, suggesting dynamic variations in connectivity are real. Hum Brain Mapp 37:3897-3910, 2016.
© 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Entities:  

Keywords:  BOLD-fMRI; dynamic correlations; functional connectivity; resting state; sliding window analysis

Mesh:

Year:  2016        PMID: 27296233      PMCID: PMC5053861          DOI: 10.1002/hbm.23284

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  33 in total

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Authors:  Peter Fransson
Journal:  Hum Brain Mapp       Date:  2005-09       Impact factor: 5.038

2.  Measuring temporal dynamics of functional networks using phase spectrum of fMRI data.

Authors:  Felice T Sun; Lee M Miller; Mark D'Esposito
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3.  Investigations into resting-state connectivity using independent component analysis.

Authors:  Christian F Beckmann; Marilena DeLuca; Joseph T Devlin; Stephen M Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

4.  Distinct brain networks for adaptive and stable task control in humans.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-18       Impact factor: 11.205

5.  High-resolution maps of real and illusory tactile activation in primary somatosensory cortex in individual monkeys with functional magnetic resonance imaging and optical imaging.

Authors:  Li M Chen; Gregory H Turner; Robert M Friedman; Na Zhang; John C Gore; Anna W Roe; Malcolm J Avison
Journal:  J Neurosci       Date:  2007-08-22       Impact factor: 6.167

6.  Time-resolved resting-state brain networks.

Authors:  Andrew Zalesky; Alex Fornito; Luca Cocchi; Leonardo L Gollo; Michael Breakspear
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

7.  Comparing causality measures of fMRI data using PCA, CCA and vector autoregressive modelling.

Authors:  Adnan Shah; Muhammad Usman Khalid; Abd-Krim Seghouane
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2012

8.  Fine-scale functional connectivity in somatosensory cortex revealed by high-resolution fMRI.

Authors:  Limin Chen; Arabinda Mishra; Allen T Newton; Victoria L Morgan; Elizabeth A Stringer; Baxter P Rogers; John C Gore
Journal:  Magn Reson Imaging       Date:  2011-10-06       Impact factor: 2.546

9.  The organization of the human cerebral cortex estimated by intrinsic functional connectivity.

Authors:  B T Thomas Yeo; Fenna M Krienen; Jorge Sepulcre; Mert R Sabuncu; Danial Lashkari; Marisa Hollinshead; Joshua L Roffman; Jordan W Smoller; Lilla Zöllei; Jonathan R Polimeni; Bruce Fischl; Hesheng Liu; Randy L Buckner
Journal:  J Neurophysiol       Date:  2011-06-08       Impact factor: 2.714

10.  Functional network organization of the human brain.

Authors:  Jonathan D Power; Alexander L Cohen; Steven M Nelson; Gagan S Wig; Kelly Anne Barnes; Jessica A Church; Alecia C Vogel; Timothy O Laumann; Fran M Miezin; Bradley L Schlaggar; Steven E Petersen
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  7 in total

1.  High spatial correspondence at a columnar level between activation and resting state fMRI signals and local field potentials.

Authors:  Zhaoyue Shi; Ruiqi Wu; Pai-Feng Yang; Feng Wang; Tung-Lin Wu; Arabinda Mishra; Li Min Chen; John C Gore
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

Review 2.  Time-Resolved Resting-State Functional Magnetic Resonance Imaging Analysis: Current Status, Challenges, and New Directions.

Authors:  Shella Keilholz; Cesar Caballero-Gaudes; Peter Bandettini; Gustavo Deco; Vince Calhoun
Journal:  Brain Connect       Date:  2017-10

Review 3.  Biophysical and neural basis of resting state functional connectivity: Evidence from non-human primates.

Authors:  Li Min Chen; Pai-Feng Yang; Feng Wang; Arabinda Mishra; Zhaoyue Shi; Ruiqi Wu; Tung-Lin Wu; George H Wilson; Zhaohua Ding; John C Gore
Journal:  Magn Reson Imaging       Date:  2017-02-02       Impact factor: 2.546

4.  The VALiDATe29 MRI Based Multi-Channel Atlas of the Squirrel Monkey Brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Tung-Lin Wu; Feng Wang; Bennett A Landman; John C Gore; Li Min Chen; Adam W Anderson
Journal:  Neuroinformatics       Date:  2017-10

5.  Resting-State fMRI Dynamics and Null Models: Perspectives, Sampling Variability, and Simulations.

Authors:  Robyn L Miller; Anees Abrol; Tulay Adali; Yuri Levin-Schwarz; Vince D Calhoun
Journal:  Front Neurosci       Date:  2018-09-06       Impact factor: 4.677

6.  On the Relationship between MRI and Local Field Potential Measurements of Spatial and Temporal Variations in Functional Connectivity.

Authors:  Zhaoyue Shi; Don M Wilkes; Pai-Feng Yang; Feng Wang; Ruiqi Wu; Tung-Lin Wu; Li Min Chen; John C Gore
Journal:  Sci Rep       Date:  2019-06-20       Impact factor: 4.379

7.  Graph theory analysis identified two hubs that connect sensorimotor and cognitive and cortical and subcortical nociceptive networks in the non-human primate.

Authors:  Ruiqi Wu; Feng Wang; Pai-Feng Yang; John C Gore; Li Min Chen
Journal:  Neuroimage       Date:  2022-05-06       Impact factor: 7.400

  7 in total

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