Literature DB >> 27294364

C-Brick: A New Standard for Assembly of Biological Parts Using Cpf1.

Shi-Yuan Li1,2, Guo-Ping Zhao1,2,3,4,5, Jin Wang1,2.   

Abstract

So far, several DNA assembly standards have been developed, enabling scientists to conveniently share and modify characterized DNA parts. However, a majority of the restriction endonucleases used in these standards bear short recognition sites (e.g., 6 bps in BioBrick standard), which are widely distributed and need to be removed before further construction, causing much inconvenience. Although homing endonucleases, which recognize long DNA sequences, can be used for DNA assembly (e.g., iBrick standard), long scars will be left between parts, limiting their application. Here, we introduce a new DNA assembly standard, namely C-Brick, which employs the newly identified class 2 type V CRISPR-Cas systems protein Cpf1 endonuclease. C-Brick integrates both advantages of long recognition sites and short scars. With C-Brick standard, three chromoprotein cassettes were assembled and further expressed in Escherichia coli, producing colorful pigments. Moreover, C-Brick standard is also partially compatible with the BglBrick and BioBrick standards.

Entities:  

Keywords:  BioBrick; C-Brick; CRISPR; Cpf1; DNA assembly; synthetic biology

Mesh:

Substances:

Year:  2016        PMID: 27294364     DOI: 10.1021/acssynbio.6b00114

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  25 in total

1.  Protocols for C-Brick DNA Standard Assembly Using Cpf1.

Authors:  Shi-Yuan Li; Guo-Ping Zhao; Jin Wang
Journal:  J Vis Exp       Date:  2017-06-15       Impact factor: 1.355

Review 2.  CRISPR-Cas type II-based Synthetic Biology applications in eukaryotic cells.

Authors:  Mario Andrea Marchisio; Zhiwei Huang
Journal:  RNA Biol       Date:  2017-01-31       Impact factor: 4.652

3.  A single digestion, single-stranded oligonucleotide mediated PCR-independent site-directed mutagenesis method.

Authors:  Mengjie Dong; Fei Wang; Qingqing Li; Rui Han; Aitao Li; Chao Zhai; Lixin Ma
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-09       Impact factor: 4.813

4.  Recent advances of genome editing and related technologies in China.

Authors:  Wen Sun; Haoyi Wang
Journal:  Gene Ther       Date:  2020-08-03       Impact factor: 5.250

5.  Diversity and evolution of class 2 CRISPR-Cas systems.

Authors:  Sergey Shmakov; Aaron Smargon; David Scott; David Cox; Neena Pyzocha; Winston Yan; Omar O Abudayyeh; Jonathan S Gootenberg; Kira S Makarova; Yuri I Wolf; Konstantin Severinov; Feng Zhang; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2017-01-23       Impact factor: 60.633

6.  Precise DNA cleavage using CRISPR-SpRYgests.

Authors:  Kathleen A Christie; Jimmy A Guo; Rachel A Silverstein; Roman M Doll; Megumu Mabuchi; Hannah E Stutzman; Jiecong Lin; Linyuan Ma; Russell T Walton; Luca Pinello; G Brett Robb; Benjamin P Kleinstiver
Journal:  Nat Biotechnol       Date:  2022-10-06       Impact factor: 68.164

7.  Heterologous Expression and Purification of CRISPR-Cas12a/Cpf1.

Authors:  Prarthana Mohanraju; John Van Der Oost; Martin Jinek; Daan C Swarts
Journal:  Bio Protoc       Date:  2018-05-05

8.  Ligation-assisted homologous recombination enables precise genome editing by deploying both MMEJ and HDR.

Authors:  Zhihan Zhao; Peng Shang; Fanny Sage; Niels Geijsen
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

Review 9.  Synbiological systems for complex natural products biosynthesis.

Authors:  Jianhua Li; Hailin Meng; Yong Wang
Journal:  Synth Syst Biotechnol       Date:  2016-10-31

10.  Mobius Assembly: A versatile Golden-Gate framework towards universal DNA assembly.

Authors:  Andreas I Andreou; Naomi Nakayama
Journal:  PLoS One       Date:  2018-01-02       Impact factor: 3.240

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