Literature DB >> 27291073

Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme.

Yoshito Abe1, Mitsuru Kubota1, Shinya Takazaki2, Yuji Ito3, Hiromi Yamamoto1, Dongchon Kang4, Tadashi Ueda1, Taiji Imoto.   

Abstract

Asn46Asp/Asp52Ser or Asn46Glu/Asp52Ser hen egg white lysozyme (HEL) mutant was designed by introducing the substituted catalytic residue Asp46 or Glu46, respectively, based on Venerupis philippinarum (Vp) lysozyme structure as a representative of invertebrate-type (i-type) lyzozyme. These mutations restored the bell-shaped pH-dependency of the enzyme activity from the sigmoidal pH-dependency observed for the Asp52Ser mutant. Furthermore both lysozyme mutants possessed retaining mechanisms like Vp lysozyme and HEL. The Asn46Glu/Asp52Ser mutant, which has a shorter distance between two catalytic residues, formed a glycosyl adduct in the reaction with the N-acetylglucosamine oligomer. Furthermore, we found the accelerated turnover through its glycosyl adduct formation and decomposition. The turnover rate estimated from the glycosyl formation and decomposition rates was only 20% of the observed hydrolysis rate of the substrate. Based on these results, we discussed the catalytic mechanism of lysozymes.
© 2016 The Protein Society.

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Keywords:  catalytic mechanism; glycosidase; glycosyl intermediate; lysozyme; mutation analysis

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Year:  2016        PMID: 27291073      PMCID: PMC5338227          DOI: 10.1002/pro.2966

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  23 in total

1.  Phylogenetic analysis of invertebrate lysozymes and the evolution of lysozyme function.

Authors:  Sana Bachali; Muriel Jager; Alexandre Hassanin; Françoise Schoentgen; Pierre Jollès; Aline Fiala-Medioni; Jean S Deutsch
Journal:  J Mol Evol       Date:  2002-05       Impact factor: 2.395

2.  Effect of protein concentration and pH on the chitinase activity of Tapes japonica lysozyme.

Authors:  Takashi Goto; Yoshito Abe; Taiji Imoto; Tadashi Ueda
Journal:  Protein Pept Lett       Date:  2010-02       Impact factor: 1.890

3.  Experimental verification of the crucial roles of Glu73 in the catalytic activity and structural stability of goose type lysozyme.

Authors:  Shunsuke Kawamura; Kohji Ohno; Mari Ohkuma; Yuki Chijiiwa; Takao Torikata
Journal:  J Biochem       Date:  2006-07       Impact factor: 3.387

4.  Amino acid sequences of lysozymes newly purified from invertebrates imply wide distribution of a novel class in the lysozyme family.

Authors:  Y Ito; A Yoshikawa; T Hotani; S Fukuda; K Sugimura; T Imoto
Journal:  Eur J Biochem       Date:  1999-01

5.  Effect of salt concentration on the pKa of acidic residues in lysozyme.

Authors:  Y Abe; T Ueda; H Iwashita; Y Hashimoto; H Motoshima; Y Tanaka; T Imoto
Journal:  J Biochem       Date:  1995-11       Impact factor: 3.387

6.  A mutation study of catalytic residue Asp 52 in hen egg lysozyme.

Authors:  Y Hashimoto; K Yamada; H Motoshima; T Omura; H Yamada; T Yasukochi; T Miki; T Ueda; T Imoto
Journal:  J Biochem       Date:  1996-01       Impact factor: 3.387

7.  Crystallographic studies of the activity of hen egg-white lysozyme.

Authors:  C C Blake; L N Johnson; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

8.  Lysozyme-catalyzed hydrolysis and transglycosylation reactions of bacterial cell wall oligosaccharides.

Authors:  D M Chipman; J J Pollock; N Sharon
Journal:  J Biol Chem       Date:  1968-02-10       Impact factor: 5.157

9.  Structural basis of the conversion of T4 lysozyme into a transglycosidase by reengineering the active site.

Authors:  R Kuroki; L H Weaver; B W Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

10.  Stabilization of a protein by removal of unfavorable abnormal pKa: substitution of undissociable residue for glutamic acid-35 in chicken lysozyme.

Authors:  M Inoue; H Yamada; Y Hashimoto; T Yasukochi; K Hamaguchi; T Miki; T Horiuchi; T Imoto
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

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  1 in total

1.  Recent structural insights into the mechanism of lysozyme hydrolysis.

Authors:  Ichiro Tanaka; Ryota Nishinomiya; Ryosuke Goto; Shun Shimazaki; Toshiyuki Chatake
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-02-19       Impact factor: 7.652

  1 in total

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