Literature DB >> 10430876

Structural basis of the conversion of T4 lysozyme into a transglycosidase by reengineering the active site.

R Kuroki1, L H Weaver, B W Matthews.   

Abstract

In contrast to hen egg-white lysozyme, which retains the beta-configuration of the substrate in the product, T4 lysozyme (T4L) is an inverting glycosidase. The substitution Thr-26 --> His, however, converts T4L from an inverting to a retaining enzyme. It is shown here that the Thr-26 --> His mutant is also a transglycosidase. Indeed, the transglycosylation reaction can be more effective than hydrolysis. In contrast, wild-type T4L has no detectable transglycosidase activity. The results support the prior hypothesis that catalysis by the Thr-26 --> His mutant proceeds via a covalent intermediate. Further mutations (Glu-11 --> His, Asp-20 --> Cys) of the T26H mutant lysozyme indicate that the catalytic mechanism of this mutant requires Glu-11 as a general acid but Asp-20 is not essential. The results help provide an overall rationalization for the activity of glycosidases, in which a highly conserved acid group (Glu-11 in T4L, Glu-35 in hen egg-white lysozyme) on the beta-side of the substrate acts as a proton donor, whereas alterations in the placement and chemical identity of residues on the alpha-side of the substrate can lead to catalysis with or without retention of the configuration, to transglycosidase activity, or to the formation of a stable enzyme-substrate adduct.

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Year:  1999        PMID: 10430876      PMCID: PMC17713          DOI: 10.1073/pnas.96.16.8949

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Mutations affecting the lysozyme of phage T4.

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Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

3.  Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution.

Authors:  L H Weaver; B W Matthews
Journal:  J Mol Biol       Date:  1987-01-05       Impact factor: 5.469

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Authors:  F W Dahlquist; C L Borders; G Jacobson; M A Raftery
Journal:  Biochemistry       Date:  1969-02       Impact factor: 3.162

5.  Multiwire area X-ray diffractometers.

Authors:  R Hamlin
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

6.  Site-directed mutagenesis of the catalytic residues Asp-52 and Glu-35 of chicken egg white lysozyme.

Authors:  B A Malcolm; S Rosenberg; M J Corey; J S Allen; A de Baetselier; J F Kirsch
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

7.  Structure and possible catalytic residues of Taka-amylase A.

Authors:  Y Matsuura; M Kusunoki; W Harada; M Kakudo
Journal:  J Biochem       Date:  1984-03       Impact factor: 3.387

8.  Lysozyme revisited: crystallographic evidence for distortion of an N-acetylmuramic acid residue bound in site D.

Authors:  N C Strynadka; M N James
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

9.  Second-site revertants of an inactive T4 lysozyme mutant restore activity by restructuring the active site cleft.

Authors:  A R Poteete; D P Sun; H Nicholson; B W Matthews
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  31 in total

Review 1.  Lysozymes in the animal kingdom.

Authors:  Lien Callewaert; Chris W Michiels
Journal:  J Biosci       Date:  2010-03       Impact factor: 1.826

2.  The pKa values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme.

Authors:  Jacob A Brockerman; Mark Okon; Stephen G Withers; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2019-01-12       Impact factor: 6.725

3.  Diverse phage-encoded toxins in a protective insect endosymbiont.

Authors:  Patrick H Degnan; Nancy A Moran
Journal:  Appl Environ Microbiol       Date:  2008-09-12       Impact factor: 4.792

4.  Structure and dynamics of a conformationally constrained nitroxide side chain and applications in EPR spectroscopy.

Authors:  Mark R Fleissner; Michael D Bridges; Evan K Brooks; Duilio Cascio; Tamás Kálai; Kálmán Hideg; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-12       Impact factor: 11.205

5.  Structural basis of bacterial defense against g-type lysozyme-based innate immunity.

Authors:  S Leysen; L Vanderkelen; S D Weeks; C W Michiels; S V Strelkov
Journal:  Cell Mol Life Sci       Date:  2012-10-21       Impact factor: 9.261

6.  Crystal structures of the catalytic domain of a novel glycohydrolase family 23 chitinase from Ralstonia sp. A-471 reveals a unique arrangement of the catalytic residues for inverting chitin hydrolysis.

Authors:  Takao Arimori; Noriko Kawamoto; Shoko Shinya; Nobuo Okazaki; Masami Nakazawa; Kazutaka Miyatake; Tamo Fukamizo; Mitsuhiro Ueda; Taro Tamada
Journal:  J Biol Chem       Date:  2013-05-08       Impact factor: 5.157

7.  Dissecting single-molecule signal transduction in carbon nanotube circuits with protein engineering.

Authors:  Yongki Choi; Tivoli J Olsen; Patrick C Sims; Issa S Moody; Brad L Corso; Mytrang N Dang; Gregory A Weiss; Philip G Collins
Journal:  Nano Lett       Date:  2013-01-24       Impact factor: 11.189

8.  Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.

Authors:  Momoyo Kitamura; Masayuki Okuyama; Fumiko Tanzawa; Haruhide Mori; Yu Kitago; Nobuhisa Watanabe; Atsuo Kimura; Isao Tanaka; Min Yao
Journal:  J Biol Chem       Date:  2008-11-03       Impact factor: 5.157

Review 9.  Glycosidase inhibition: assessing mimicry of the transition state.

Authors:  Tracey M Gloster; Gideon J Davies
Journal:  Org Biomol Chem       Date:  2009-11-05       Impact factor: 3.876

10.  Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs.

Authors:  Alexandre Wohlkönig; Joëlle Huet; Yvan Looze; René Wintjens
Journal:  PLoS One       Date:  2010-11-09       Impact factor: 3.240

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