Literature DB >> 27290724

Analysis of the metatranscriptome of microbial communities of an alkaline hot sulfur spring revealed different gene encoding pathway enzymes associated with energy metabolism.

Swetaleena Tripathy1, Soumesh Kumar Padhi1, Sriprakash Mohanty1, Mrinal Samanta1, Nikhil Kumar Maiti2.   

Abstract

Alkaline sulfur hot springs notable for their specialized and complex ecosystem powered by geothermal energy are abundantly rich in different chemotrophic and phototrophic thermophilic microorganisms. Survival and adaptation of these organisms in the extreme environment is specifically related to energy metabolism. To gain a better understanding of survival mechanism of the organisms in these ecosystems, we determined the different gene encoding enzymes associated with anaerobic pathways of energy metabolism by applying the metatranscriptomics approach. The analysis of the microbial population of hot sulfur spring revealed the presence of both aerobic and anaerobic organisms indicating dual mode of lifestyle of the community members. Proteobacteria (28.1 %) was the most dominant community. A total of 988 reads were associated with energy metabolism, out of which 33.7 % of the reads were assigned to nitrogen, sulfur, and methane metabolism based on KEGG classification. The major lineages of hot spring communities were linked with the anaerobic pathways. Different gene encoding enzymes (hao, nir, nar, cysH, cysI, acs) showed the involvement of microbial members in nitrification, denitrification, dissimilatory sulfate reduction, and methane generation. This study enhances our understanding of important gene encoding enzymes involved in energy metabolism, required for the survival and adaptation of microbial communities in the hot spring.

Entities:  

Keywords:  Energy metabolism; Functional pathways; Hot spring; Microbial communities

Mesh:

Substances:

Year:  2016        PMID: 27290724     DOI: 10.1007/s00792-016-0846-6

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  33 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats.

Authors:  S Skirnisdottir; G O Hreggvidsson; S Hjörleifsdottir; V T Marteinsson; S K Petursdottir; O Holst; J K Kristjansson
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

3.  Analysis of environmental transcriptomes by DNA microarrays.

Authors:  Víctor Parro; Mercedes Moreno-Paz; Elena González-Toril
Journal:  Environ Microbiol       Date:  2007-02       Impact factor: 5.491

4.  Microbial diversity of boron-rich volcanic hot springs of St. Lucia, Lesser Antilles.

Authors:  Lisa M Stout; Ruth E Blake; James P Greenwood; Anna M Martini; Eben C Rose
Journal:  FEMS Microbiol Ecol       Date:  2009-09-07       Impact factor: 4.194

5.  Integrative analysis of environmental sequences using MEGAN4.

Authors:  Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster
Journal:  Genome Res       Date:  2011-06-20       Impact factor: 9.043

6.  SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

Authors:  Evguenia Kopylova; Laurent Noé; Hélène Touzet
Journal:  Bioinformatics       Date:  2012-10-15       Impact factor: 6.937

7.  Nitric oxide reductase (norB) genes from pure cultures and environmental samples.

Authors:  Gesche Braker; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

8.  Sulfur metabolisms in epsilon- and gamma-proteobacteria in deep-sea hydrothermal fields.

Authors:  Masahiro Yamamoto; Ken Takai
Journal:  Front Microbiol       Date:  2011-09-20       Impact factor: 5.640

9.  Diversity of marine bacteria producing beta-glucosidase inhibitors.

Authors:  Sony Pandey; Ayinampudi Sree; Soumya Suchismita Dash; Dipti Priya Sethi; Lipsa Chowdhury
Journal:  Microb Cell Fact       Date:  2013-04-17       Impact factor: 5.328

10.  Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome.

Authors:  Tim Urich; Anders Lanzén; Ji Qi; Daniel H Huson; Christa Schleper; Stephan C Schuster
Journal:  PLoS One       Date:  2008-06-25       Impact factor: 3.240

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  7 in total

1.  Diversity and Distribution of Thermophilic Bacteria in Hot Springs of Pakistan.

Authors:  Arshia Amin; Iftikhar Ahmed; Nimaichand Salam; Byung-Yong Kim; Dharmesh Singh; Xiao-Yang Zhi; Min Xiao; Wen-Jun Li
Journal:  Microb Ecol       Date:  2017-01-19       Impact factor: 4.552

2.  Unexpected fungal communities in the Rehai thermal springs of Tengchong influenced by abiotic factors.

Authors:  Kai-Hui Liu; Xiao-Wei Ding; Nimaichand Salam; Bo Zhang; Xiao-Fei Tang; Baiwan Deng; Wen-Jun Li
Journal:  Extremophiles       Date:  2018-02-23       Impact factor: 2.395

3.  Metatranscriptomics analysis of mangroves habitats around Mauritius.

Authors:  Sillma Rampadarath; Kushlata Bandhoa; Daneshwar Puchooa; Rajesh Jeewon; Subhasisa Bal
Journal:  World J Microbiol Biotechnol       Date:  2018-04-02       Impact factor: 3.312

Review 4.  Bioprospecting of Novel Extremozymes From Prokaryotes-The Advent of Culture-Independent Methods.

Authors:  Maksim Sysoev; Stefan W Grötzinger; Dominik Renn; Jörg Eppinger; Magnus Rueping; Ram Karan
Journal:  Front Microbiol       Date:  2021-02-10       Impact factor: 5.640

5.  Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases.

Authors:  María-Eugenia DeCastro; Michael P Doane; Elizabeth Ann Dinsdale; Esther Rodríguez-Belmonte; María-Isabel González-Siso
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

6.  Comparative Metagenomic Analysis of Two Hot Springs From Ourense (Northwestern Spain) and Others Worldwide.

Authors:  María-Eugenia DeCastro; Juan-José Escuder-Rodríguez; Manuel Becerra; Esther Rodríguez-Belmonte; María-Isabel González-Siso
Journal:  Front Microbiol       Date:  2021-11-26       Impact factor: 5.640

7.  Metagenomics revealing molecular profiling of community structure and metabolic pathways in natural hot springs of the Sikkim Himalaya.

Authors:  Nitish Sharma; Jitesh Kumar; Md Minhajul Abedin; Dinabandhu Sahoo; Ashok Pandey; Amit K Rai; Sudhir P Singh
Journal:  BMC Microbiol       Date:  2020-08-10       Impact factor: 3.605

  7 in total

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