Literature DB >> 33420292

Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases.

María-Eugenia DeCastro1, Michael P Doane2,3, Elizabeth Ann Dinsdale2,4, Esther Rodríguez-Belmonte1, María-Isabel González-Siso5.   

Abstract

In the present study we investigate the microbial community inhabiting As Burgas geothermal spring, located in Ourense (Galicia, Spain). The approximately 23 Gbp of Illumina sequences generated for each replicate revealed a complex microbial community dominated by Bacteria in which Proteobacteria and Aquificae were the two prevalent phyla. An association between the two most prevalent genera, Thermus and Hydrogenobacter, was suggested by the relationship of their metabolism. The high relative abundance of sequences involved in the Calvin-Benson cycle and the reductive TCA cycle unveils the dominance of an autotrophic population. Important pathways from the nitrogen and sulfur cycle are potentially taking place in As Burgas hot spring. In the assembled reads, two complete ORFs matching GH2 beta-galactosidases were found. To assess their functional characterization, the two ORFs were cloned and overexpressed in E. coli. The pTsbg enzyme had activity towards o-Nitrophenyl-β-D-galactopyranoside (ONPG) and p-Nitrophenyl-β-D-fucopyranoside, with high thermal stability and showing maximal activity at 85 °C and pH 6, nevertheless the enzyme failed to hydrolyze lactose. The other enzyme, Tsbg, was unable to hydrolyze even ONPG or lactose. This finding highlights the challenge of finding novel active enzymes based only on their sequence.

Entities:  

Year:  2021        PMID: 33420292      PMCID: PMC7794327          DOI: 10.1038/s41598-020-80489-6

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  93 in total

Review 1.  Experimental Design and Bioinformatics Analysis for the Application of Metagenomics in Environmental Sciences and Biotechnology.

Authors:  Feng Ju; Tong Zhang
Journal:  Environ Sci Technol       Date:  2015-10-20       Impact factor: 9.028

Review 2.  Employment of fucosidases for the synthesis of fucosylated oligosaccharides with biological potential.

Authors:  Francisco Guzmán-Rodríguez; Sergio Alatorre-Santamaría; Lorena Gómez-Ruiz; Gabriela Rodríguez-Serrano; Mariano García-Garibay; Alma Cruz-Guerrero
Journal:  Biotechnol Appl Biochem       Date:  2018-12-03       Impact factor: 2.431

3.  Microbial diversity and autotrophic activity in Kamchatka hot springs.

Authors:  Alexander Yu Merkel; Nikolay V Pimenov; Igor I Rusanov; Alexander I Slobodkin; Galina B Slobodkina; Ivan Yu Tarnovetckii; Evgeny N Frolov; Arseny V Dubin; Anna A Perevalova; Elizaveta A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2016-12-27       Impact factor: 2.395

4.  Archaeal and bacterial diversity in acidic to circumneutral hot springs in the Philippines.

Authors:  Qiuyuan Huang; Hongchen Jiang; Brandon R Briggs; Shang Wang; Weiguo Hou; Gaoyuan Li; Geng Wu; Ramonito Solis; Carlo A Arcilla; Teofilo Abrajano; Hailiang Dong
Journal:  FEMS Microbiol Ecol       Date:  2013-05-13       Impact factor: 4.194

5.  Characterization of a glycoside hydrolase family 1 β-galactosidase from hot spring metagenome with transglycosylation activity.

Authors:  Richa Gupta; Tanvi Govil; Neena Capalash; Prince Sharma
Journal:  Appl Biochem Biotechnol       Date:  2012-09-27       Impact factor: 2.926

6.  The skin microbiome of the common thresher shark (Alopias vulpinus) has low taxonomic and gene function β-diversity.

Authors:  Michael P Doane; John Matthew Haggerty; Dovi Kacev; Bhavya Papudeshi; Elizabeth A Dinsdale
Journal:  Environ Microbiol Rep       Date:  2017-06-27       Impact factor: 3.541

7.  Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes.

Authors:  Patricia C Dos Santos; Zhong Fang; Steven W Mason; João C Setubal; Ray Dixon
Journal:  BMC Genomics       Date:  2012-05-03       Impact factor: 3.969

8.  Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach.

Authors:  Amitsinh Mangrola; Pravin Dudhagara; Prakash Koringa; C G Joshi; Mansi Parmar; Rajesh Patel
Journal:  Genom Data       Date:  2015-04-20

9.  Complete metagenome sequencing based bacterial diversity and functional insights from basaltic hot spring of Unkeshwar, Maharashtra, India.

Authors:  Gajanan T Mehetre; Aditi S Paranjpe; Syed G Dastager; Mahesh S Dharne
Journal:  Genom Data       Date:  2015-12-31

10.  The Pfam protein families database in 2019.

Authors:  Sara El-Gebali; Jaina Mistry; Alex Bateman; Sean R Eddy; Aurélien Luciani; Simon C Potter; Matloob Qureshi; Lorna J Richardson; Gustavo A Salazar; Alfredo Smart; Erik L L Sonnhammer; Layla Hirsh; Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  3 in total

1.  Bacterial diversity of geochemically distinct hot springs located in Maharashtra, India.

Authors:  R Mathan Kumar; Kunal Jani; J R Parvathi; Becky M Thomas; Suresh S S Raja; Anita Pandey; Avinash Sharma
Journal:  Arch Microbiol       Date:  2022-01-03       Impact factor: 2.552

2.  Stress Dependent Biofilm Formation and Bioactive Melanin Pigment Production by a Thermophilic Bacillus Species from Chilean Hot Spring.

Authors:  Cathalina Marín-Sanhueza; Alex Echeverría-Vega; Aleydis Gómez; Gustavo Cabrera-Barjas; Romina Romero; Aparna Banerjee
Journal:  Polymers (Basel)       Date:  2022-02-10       Impact factor: 4.329

3.  Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis.

Authors:  Tereza Smrhova; Kunal Jani; Petr Pajer; Gabriela Kapinusova; Tomas Vylita; Jachym Suman; Michal Strejcek; Ondrej Uhlik
Journal:  Environ Microbiome       Date:  2022-09-11
  3 in total

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