Literature DB >> 27284201

Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut.

Nick J Proudfoot1.   

Abstract

Terminating transcription is a highly intricate process for mammalian protein-coding genes. First, the chromatin template slows down transcription at the gene end. Then, the transcript is cleaved at the poly(A) signal to release the messenger RNA. The remaining transcript is selectively unraveled and degraded. This induces critical conformational changes in the heart of the enzyme that trigger termination. Termination can also occur at variable positions along the gene and so prevent aberrant transcript formation or intentionally make different transcripts. These may form multiple messenger RNAs with altered regulatory properties or encode different proteins. Finally, termination can be perturbed to achieve particular cellular needs or blocked in cancer or virally infected cells. In such cases, failure to terminate transcription can spell disaster for the cell.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27284201      PMCID: PMC5144996          DOI: 10.1126/science.aad9926

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  97 in total

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Authors:  Monika Gullerova; Nick J Proudfoot
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

2.  Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing.

Authors:  Kalpana Kannan; Liguo Wang; Jianghua Wang; Michael M Ittmann; Wei Li; Laising Yen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-12       Impact factor: 11.205

3.  Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

Authors:  Henri G A M van Luenen; Carol Farris; Sabrina Jan; Paul-Andre Genest; Pankaj Tripathi; Arno Velds; Ron M Kerkhoven; Marja Nieuwland; Andrew Haydock; Gowthaman Ramasamy; Saara Vainio; Tatjana Heidebrecht; Anastassis Perrakis; Ludo Pagie; Bas van Steensel; Peter J Myler; Piet Borst
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

4.  Transcriptional activators enhance polyadenylation of mRNA precursors.

Authors:  Takashi Nagaike; Charlotte Logan; Ikuko Hotta; Orit Rozenblatt-Rosen; Matthew Meyerson; James L Manley
Journal:  Mol Cell       Date:  2011-02-18       Impact factor: 17.970

5.  CPEB1 coordinates alternative 3'-UTR formation with translational regulation.

Authors:  Felice-Alessio Bava; Carolina Eliscovich; Pedro G Ferreira; Belen Miñana; Claudia Ben-Dov; Roderic Guigó; Juan Valcárcel; Raúl Méndez
Journal:  Nature       Date:  2013-02-24       Impact factor: 49.962

6.  Poly(A) signals control both transcriptional termination and initiation between the tandem GAL10 and GAL7 genes of Saccharomyces cerevisiae.

Authors:  I H Greger; N J Proudfoot
Journal:  EMBO J       Date:  1998-08-17       Impact factor: 11.598

Review 7.  Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription.

Authors:  Martin Heidemann; Corinna Hintermair; Kirsten Voß; Dirk Eick
Journal:  Biochim Biophys Acta       Date:  2012-09-07

8.  Poly(A) site selection in the HIV-1 provirus: inhibition of promoter-proximal polyadenylation by the downstream major splice donor site.

Authors:  M P Ashe; P Griffin; W James; N J Proudfoot
Journal:  Genes Dev       Date:  1995-12-01       Impact factor: 11.361

9.  Widespread Inducible Transcription Downstream of Human Genes.

Authors:  Anna Vilborg; Maria C Passarelli; Therese A Yario; Kazimierz T Tycowski; Joan A Steitz
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

10.  Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.

Authors:  Paul-Andre Genest; Loren Baugh; Alex Taipale; Wanqi Zhao; Sabrina Jan; Henri G A M van Luenen; Jonas Korlach; Tyson Clark; Khai Luong; Matthew Boitano; Steve Turner; Peter J Myler; Piet Borst
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

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  156 in total

1.  Recent molecular insights into canonical pre-mRNA 3'-end processing.

Authors:  Yadong Sun; Keith Hamilton; Liang Tong
Journal:  Transcription       Date:  2020-06-11

2.  Widespread Backtracking by RNA Pol II Is a Major Effector of Gene Activation, 5' Pause Release, Termination, and Transcription Elongation Rate.

Authors:  Ryan M Sheridan; Nova Fong; Angelo D'Alessandro; David L Bentley
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

3.  CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors:  Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal:  Cell Rep       Date:  2019-07-02       Impact factor: 9.423

4.  Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive.

Authors:  Chuan Xu; Jianzhi Zhang
Journal:  Cell Syst       Date:  2018-06-06       Impact factor: 10.304

5.  Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae.

Authors:  Rani Yeung; Duncan J Smith
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

6.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

Authors:  Lidiya V Boldyreva; Lyubov A Yarinich; Elena N Kozhevnikova; Anton V Ivankin; Mikhail O Lebedev; Alexey V Pindyurin
Journal:  Mol Biol Rep       Date:  2021-01-31       Impact factor: 2.316

Review 7.  Regulatory feedback from nascent RNA to chromatin and transcription.

Authors:  Lenka Skalska; Manuel Beltran-Nebot; Jernej Ule; Richard G Jenner
Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-08       Impact factor: 94.444

8.  CDK regulation of transcription by RNAP II: Not over 'til it's over?

Authors:  Robert P Fisher
Journal:  Transcription       Date:  2016-12-22

Review 9.  Molecular mechanisms driving transcriptional stress responses.

Authors:  Anniina Vihervaara; Fabiana M Duarte; John T Lis
Journal:  Nat Rev Genet       Date:  2018-06       Impact factor: 53.242

10.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

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