Literature DB >> 27283661

New integrative computational approaches unveil the Saccharomyces cerevisiae pheno-metabolomic fermentative profile and allow strain selection for winemaking.

Ricardo Franco-Duarte1, Lan Umek2, Inês Mendes3, Cristiana C Castro4, Nuno Fonseca3, Rosa Martins5, António C Silva-Ferreira5, Paula Sampaio3, Célia Pais3, Dorit Schuller3.   

Abstract

During must fermentation by Saccharomyces cerevisiae strains thousands of volatile aroma compounds are formed. The objective of the present work was to adapt computational approaches to analyze pheno-metabolomic diversity of a S. cerevisiae strain collection with different origins. Phenotypic and genetic characterization together with individual must fermentations were performed, and metabolites relevant to aromatic profiles were determined. Experimental results were projected onto a common coordinates system, revealing 17 statistical-relevant multi-dimensional modules, combining sets of most-correlated features of noteworthy biological importance. The present method allowed, as a breakthrough, to combine genetic, phenotypic and metabolomic data, which has not been possible so far due to difficulties in comparing different types of data. Therefore, the proposed computational approach revealed as successful to shed light into the holistic characterization of S. cerevisiae pheno-metabolome in must fermentative conditions. This will allow the identification of combined relevant features with application in selection of good winemaking strains.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Data-fusion; Matrix factorization; Metabolomics; Saccharomyces cerevisiae; Wine yeasts

Mesh:

Year:  2016        PMID: 27283661     DOI: 10.1016/j.foodchem.2016.05.080

Source DB:  PubMed          Journal:  Food Chem        ISSN: 0308-8146            Impact factor:   7.514


  6 in total

Review 1.  Wine and grape marc spirits metabolomics.

Authors:  Dimitra Diamantidou; Anastasia Zotou; Georgios Theodoridis
Journal:  Metabolomics       Date:  2018-12-11       Impact factor: 4.290

2.  Torulaspora delbrueckii Phenotypic and Metabolic Profiling towards Its Biotechnological Exploitation.

Authors:  Flávia Silva-Sousa; Ticiana Fernandes; Fábio Pereira; Diana Rodrigues; Teresa Rito; Carole Camarasa; Ricardo Franco-Duarte; Maria João Sousa
Journal:  J Fungi (Basel)       Date:  2022-05-26

3.  Adaptation of central metabolite pools to variations in growth rate and cultivation conditions in Saccharomyces cerevisiae.

Authors:  Kanhaiya Kumar; Vishwesh Venkatraman; Per Bruheim
Journal:  Microb Cell Fact       Date:  2021-03-09       Impact factor: 5.328

4.  Improvement of Torulaspora delbrueckii Genome Annotation: Towards the Exploitation of Genomic Features of a Biotechnologically Relevant Yeast.

Authors:  Carolina Santiago; Teresa Rito; Daniel Vieira; Ticiana Fernandes; Célia Pais; Maria João Sousa; Pedro Soares; Ricardo Franco-Duarte
Journal:  J Fungi (Basel)       Date:  2021-04-10

5.  Multi-Omics Analysis of Multiple Glucose-Sensing Receptor Systems in Yeast.

Authors:  Shuang Li; Yuanyuan Li; Blake R Rushing; Sarah E Harris; Susan L McRitchie; Daniel Dominguez; Susan J Sumner; Henrik G Dohlman
Journal:  Biomolecules       Date:  2022-01-21

6.  Whole-Genome Sequencing and Annotation of the Yeast Clavispora santaluciae Reveals Important Insights about Its Adaptation to the Vineyard Environment.

Authors:  Ricardo Franco-Duarte; Neža Čadež; Teresa Rito; João Drumonde-Neves; Yazmid Reyes Dominguez; Célia Pais; Maria João Sousa; Pedro Soares
Journal:  J Fungi (Basel)       Date:  2022-01-05
  6 in total

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