Literature DB >> 27281202

Translation readthrough mitigation.

Joshua A Arribere, Elif S Cenik, Nimit Jain, Gaelen T Hess, Cameron H Lee, Michael C Bassik, Andrew Z Fire.   

Abstract

A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Here, through a combination of transgenics and CRISPR–Cas9 gene editing in Caenorhabditis elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal-extended proteins that result from failure to terminate at stop codons. Sequences encoded by the 3′ untranslated region (UTR) were sufficient to lower protein levels. Measurements of mRNA levels and translation suggested a co- or post-translational mechanism of action for these sequences in C. elegans. Similar mechanisms evidently operate in human cells, in which we observed a comparable tendency for translated human 3′ UTR sequences to reduce mature protein expression in tissue culture assays, including 3′ UTR sequences from the hypomorphic ‘Constant Spring’ haemoglobin stop codon variant. We suggest that 3′ UTRs may encode peptide sequences that destabilize the attached protein, providing mitigation of unwelcome and varied translation errors.

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Year:  2016        PMID: 27281202      PMCID: PMC5054982          DOI: 10.1038/nature18308

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  54 in total

1.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

2.  The unc-45 gene of Caenorhabditis elegans is an essential muscle-affecting gene with maternal expression.

Authors:  L Venolia; R H Waterston
Journal:  Genetics       Date:  1990-10       Impact factor: 4.562

3.  The gene structures of spontaneous mutations affecting a Caenorhabditis elegans myosin heavy chain gene.

Authors:  D Eide; P Anderson
Journal:  Genetics       Date:  1985-01       Impact factor: 4.562

4.  A decamer duplication in the 3' region of the BRI gene originates an amyloid peptide that is associated with dementia in a Danish kindred.

Authors:  R Vidal; T Revesz; A Rostagno; E Kim; J L Holton; T Bek; M Bojsen-Møller; H Braendgaard; G Plant; J Ghiso; B Frangione
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

5.  A second informational suppressor, SUP-7 X, in Caenorhabditis elegans.

Authors:  R H Waterston
Journal:  Genetics       Date:  1981-02       Impact factor: 4.562

6.  Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Ryan T Bell; Becky X H Fu; Karen L Artiles; Phil S Hartman; Andrew Z Fire
Journal:  Genetics       Date:  2014-08-26       Impact factor: 4.562

7.  Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method.

Authors:  J Field; J Nikawa; D Broek; B MacDonald; L Rodgers; I A Wilson; R A Lerner; M Wigler
Journal:  Mol Cell Biol       Date:  1988-05       Impact factor: 4.272

8.  Mutations causing transformation of sexual phenotype in the nematode Caenorhabditis elegans.

Authors:  J A Hodgkin; S Brenner
Journal:  Genetics       Date:  1977-06       Impact factor: 4.562

9.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

10.  The pha-4 gene is required to generate the pharyngeal primordium of Caenorhabditis elegans.

Authors:  S E Mango; E J Lambie; J Kimble
Journal:  Development       Date:  1994-10       Impact factor: 6.868

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  37 in total

1.  Developmental regulators FlbE/D orchestrate the polarity site-to-nucleus dynamics of the fungal bZIP transcription factor FlbB.

Authors:  Ainara Otamendi; Elixabet Perez-de-Nanclares-Arregi; Elixabet Oiartzabal-Arano; Marc S Cortese; Eduardo A Espeso; Oier Etxebeste
Journal:  Cell Mol Life Sci       Date:  2019-05-07       Impact factor: 9.261

Review 2.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

Review 3.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

4.  Readthrough Errors Purge Deleterious Cryptic Sequences, Facilitating the Birth of Coding Sequences.

Authors:  Luke J Kosinski; Joanna Masel
Journal:  Mol Biol Evol       Date:  2020-06-01       Impact factor: 16.240

Review 5.  Beyond the Triplet Code: Context Cues Transform Translation.

Authors:  Gloria A Brar
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

Review 6.  Exploiting non-canonical translation to identify new targets for T cell-based cancer immunotherapy.

Authors:  Céline M Laumont; Claude Perreault
Journal:  Cell Mol Life Sci       Date:  2017-08-19       Impact factor: 9.261

7.  Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans.

Authors:  Elif Sarinay Cenik; Xuefeng Meng; Ngang Heok Tang; Richard Nelson Hall; Joshua A Arribere; Can Cenik; Yishi Jin; Andrew Fire
Journal:  Dev Cell       Date:  2019-02-21       Impact factor: 12.270

8.  Translational read-through promotes aggregation and shapes stop codon identity.

Authors:  Lior Kramarski; Eyal Arbely
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

9.  Gentamicin B1 is a minor gentamicin component with major nonsense mutation suppression activity.

Authors:  Alireza Baradaran-Heravi; Jürgen Niesser; Aruna D Balgi; Kunho Choi; Carla Zimmerman; Andrew P South; Hilary J Anderson; Natalie C Strynadka; Marcel B Bally; Michel Roberge
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

10.  C-Terminal End-Directed Protein Elimination by CRL2 Ubiquitin Ligases.

Authors:  Hsiu-Chuan Lin; Chi-Wei Yeh; Yen-Fu Chen; Ting-Ting Lee; Pei-Yun Hsieh; Domnita V Rusnac; Sung-Ya Lin; Stephen J Elledge; Ning Zheng; Hsueh-Chi S Yen
Journal:  Mol Cell       Date:  2018-05-17       Impact factor: 17.970

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