Literature DB >> 27269374

Computational models of airway branching morphogenesis.

Victor D Varner1, Celeste M Nelson2.   

Abstract

The bronchial network of the mammalian lung consists of millions of dichotomous branches arranged in a highly complex, space-filling tree. Recent computational models of branching morphogenesis in the lung have helped uncover the biological mechanisms that construct this ramified architecture. In this review, we focus on three different theoretical approaches - geometric modeling, reaction-diffusion modeling, and continuum mechanical modeling - and discuss how, taken together, these models have identified the geometric principles necessary to build an efficient bronchial network, as well as the patterning mechanisms that specify airway geometry in the developing embryo. We emphasize models that are integrated with biological experiments and suggest how recent progress in computational modeling has advanced our understanding of airway branching morphogenesis.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Mechanobiology; Morphodynamics; Quantitative models; Turing patterns

Mesh:

Substances:

Year:  2016        PMID: 27269374      PMCID: PMC5136345          DOI: 10.1016/j.semcdb.2016.06.003

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  48 in total

Review 1.  Genetic control of branching morphogenesis.

Authors:  R J Metzger; M A Krasnow
Journal:  Science       Date:  1999-06-04       Impact factor: 47.728

2.  Architecture of the human lung. Use of quantitative methods establishes fundamental relations between size and number of lung structures.

Authors:  E R WEIBEL; D M GOMEZ
Journal:  Science       Date:  1962-08-24       Impact factor: 47.728

Review 3.  Sculpting organs: mechanical regulation of tissue development.

Authors:  Celeste M Nelson; Jason P Gleghorn
Journal:  Annu Rev Biomed Eng       Date:  2012-04-18       Impact factor: 9.590

4.  Apical constriction initiates new bud formation during monopodial branching of the embryonic chicken lung.

Authors:  Hye Young Kim; Victor D Varner; Celeste M Nelson
Journal:  Development       Date:  2013-07-03       Impact factor: 6.868

Review 5.  What makes a good lung?

Authors:  Ewald R Weibel
Journal:  Swiss Med Wkly       Date:  2009-07-11       Impact factor: 2.193

6.  The branching programme of mouse lung development.

Authors:  Ross J Metzger; Ophir D Klein; Gail R Martin; Mark A Krasnow
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

7.  Morphogenetic implications of peristaltic fluid-tissue dynamics in the embryonic lung.

Authors:  Kishore K Bokka; Edwin C Jesudason; David Warburton; Sharon R Lubkin
Journal:  J Theor Biol       Date:  2015-07-10       Impact factor: 2.691

8.  Fgf10 is essential for limb and lung formation.

Authors:  K Sekine; H Ohuchi; M Fujiwara; M Yamasaki; T Yoshizawa; T Sato; N Yagishita; D Matsui; Y Koga; N Itoh; S Kato
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

9.  Fibroblast growth factor 10 (FGF10) and branching morphogenesis in the embryonic mouse lung.

Authors:  S Bellusci; J Grindley; H Emoto; N Itoh; B L Hogan
Journal:  Development       Date:  1997-12       Impact factor: 6.868

10.  A role for mesenchyme dynamics in mouse lung branching morphogenesis.

Authors:  Pierre Blanc; Karen Coste; Pierre Pouchin; Jean-Marc Azaïs; Loïc Blanchon; Denis Gallot; Vincent Sapin
Journal:  PLoS One       Date:  2012-07-23       Impact factor: 3.240

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  7 in total

Review 1.  Building and Regenerating the Lung Cell by Cell.

Authors:  Jeffrey A Whitsett; Tanya V Kalin; Yan Xu; Vladimir V Kalinichenko
Journal:  Physiol Rev       Date:  2019-01-01       Impact factor: 37.312

2.  Multi-scale models of lung fibrosis.

Authors:  Julie Leonard-Duke; Stephanie Evans; Riley T Hannan; Thomas H Barker; Jason H T Bates; Catherine A Bonham; Bethany B Moore; Denise E Kirschner; Shayn M Peirce
Journal:  Matrix Biol       Date:  2020-05-11       Impact factor: 11.583

3.  Cellular mechanisms of morphogenesis.

Authors:  Jennifer A Zallen; Bob Goldstein
Journal:  Semin Cell Dev Biol       Date:  2017-07       Impact factor: 7.727

Review 4.  Patterned cell and matrix dynamics in branching morphogenesis.

Authors:  Shaohe Wang; Rei Sekiguchi; William P Daley; Kenneth M Yamada
Journal:  J Cell Biol       Date:  2017-02-07       Impact factor: 10.539

5.  Spontaneous calcium activity in metanephric mesenchymal cells regulates branching morphogenesis in the embryonic kidney.

Authors:  Jacopo M Fontana; Georgiy R Khodus; David Unnersjö-Jess; Hans Blom; Anita Aperia; Hjalmar Brismar
Journal:  FASEB J       Date:  2018-11-29       Impact factor: 5.191

Review 6.  Fgf10/Fgfr2b Signaling Orchestrates the Symphony of Molecular, Cellular, and Physical Processes Required for Harmonious Airway Branching Morphogenesis.

Authors:  Matthew R Jones; Lei Chong; Saverio Bellusci
Journal:  Front Cell Dev Biol       Date:  2021-01-12

7.  AVATREE: An open-source computational modelling framework modelling Anatomically Valid Airway TREE conformations.

Authors:  Stavros Nousias; Evangelia I Zacharaki; Konstantinos Moustakas
Journal:  PLoS One       Date:  2020-04-03       Impact factor: 3.240

  7 in total

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