Literature DB >> 32438056

Multi-scale models of lung fibrosis.

Julie Leonard-Duke1, Stephanie Evans2, Riley T Hannan3, Thomas H Barker1, Jason H T Bates4, Catherine A Bonham5, Bethany B Moore6, Denise E Kirschner2, Shayn M Peirce7.   

Abstract

The architectural complexity of the lung is crucial to its ability to function as an organ of gas exchange; the branching tree structure of the airways transforms the tracheal cross-section of only a few square centimeters to a blood-gas barrier with a surface area of tens of square meters and a thickness on the order of a micron or less. Connective tissue comprised largely of collagen and elastic fibers provides structural integrity for this intricate and delicate system. Homeostatic maintenance of this connective tissue, via a balance between catabolic and anabolic enzyme-driven processes, is crucial to life. Accordingly, when homeostasis is disrupted by the excessive production of connective tissue, lung function deteriorates rapidly with grave consequences leading to chronic lung conditions such as pulmonary fibrosis. Understanding how pulmonary fibrosis develops and alters the link between lung structure and function is crucial for diagnosis, prognosis, and therapy. Further information gained could help elaborate how the healing process breaks down leading to chronic disease. Our understanding of fibrotic disease is greatly aided by the intersection of wet lab studies and mathematical and computational modeling. In the present review we will discuss how multi-scale modeling has facilitated our understanding of pulmonary fibrotic disease as well as identified opportunities that remain open and have produced techniques that can be incorporated into this field by borrowing approaches from multi-scale models of fibrosis beyond the lung.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Fibroblast; Lung fibrosis; Multi-scale computational models

Year:  2020        PMID: 32438056      PMCID: PMC7434655          DOI: 10.1016/j.matbio.2020.04.003

Source DB:  PubMed          Journal:  Matrix Biol        ISSN: 0945-053X            Impact factor:   11.583


  111 in total

Review 1.  Standardisation of the measurement of lung volumes.

Authors:  J Wanger; J L Clausen; A Coates; O F Pedersen; V Brusasco; F Burgos; R Casaburi; R Crapo; P Enright; C P M van der Grinten; P Gustafsson; J Hankinson; R Jensen; D Johnson; N Macintyre; R McKay; M R Miller; D Navajas; R Pellegrino; G Viegi
Journal:  Eur Respir J       Date:  2005-09       Impact factor: 16.671

Review 2.  Tuberculosis as a three-act play: A new paradigm for the pathogenesis of pulmonary tuberculosis.

Authors:  Robert L Hunter
Journal:  Tuberculosis (Edinb)       Date:  2016-01-02       Impact factor: 3.131

3.  An agent-based model of inflammation and fibrosis following particulate exposure in the lung.

Authors:  Bryan N Brown; Ian M Price; Franklin R Toapanta; Dilhari R DeAlmeida; Clayton A Wiley; Ted M Ross; Tim D Oury; Yoram Vodovotz
Journal:  Math Biosci       Date:  2011-03-06       Impact factor: 2.144

4.  Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems.

Authors:  Nicholas A Cilfone; Denise E Kirschner; Jennifer J Linderman
Journal:  Cell Mol Bioeng       Date:  2015-03       Impact factor: 2.321

Review 5.  Wound repair and regeneration.

Authors:  Geoffrey C Gurtner; Sabine Werner; Yann Barrandon; Michael T Longaker
Journal:  Nature       Date:  2008-05-15       Impact factor: 49.962

6.  Generation of lung organoids from human pluripotent stem cells in vitro.

Authors:  Alyssa J Miller; Briana R Dye; Daysha Ferrer-Torres; David R Hill; Arend W Overeem; Lonnie D Shea; Jason R Spence
Journal:  Nat Protoc       Date:  2019-02       Impact factor: 13.491

7.  Gastroesophageal reflux and idiopathic pulmonary fibrosis: a review.

Authors:  Ahmed Fahim; Michael Crooks; Simon P Hart
Journal:  Pulm Med       Date:  2010-12-09

Review 8.  Pseudomonas aeruginosa Diversification during Infection Development in Cystic Fibrosis Lungs-A Review.

Authors:  Ana Margarida Sousa; Maria Olívia Pereira
Journal:  Pathogens       Date:  2014-08-18

9.  Model-based analysis of competing-endogenous pathways (MACPath) in human cancers.

Authors:  Hyun Jung Park; Soyeon Kim; Wei Li
Journal:  PLoS Comput Biol       Date:  2018-03-22       Impact factor: 4.475

10.  Multiscale Coupling of an Agent-Based Model of Tissue Fibrosis and a Logic-Based Model of Intracellular Signaling.

Authors:  S Michaela Rikard; Thomas L Athey; Anders R Nelson; Steven L M Christiansen; Jia-Jye Lee; Jeffrey W Holmes; Shayn M Peirce; Jeffrey J Saucerman
Journal:  Front Physiol       Date:  2019-12-17       Impact factor: 4.566

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  7 in total

Review 1.  Fibroblasts: The arbiters of extracellular matrix remodeling.

Authors:  Kristine Y DeLeon-Pennell; Thomas H Barker; Merry L Lindsey
Journal:  Matrix Biol       Date:  2020-06-03       Impact factor: 11.583

Review 2.  Computational lung modelling in respiratory medicine.

Authors:  Sunder Neelakantan; Yi Xin; Donald P Gaver; Maurizio Cereda; Rahim Rizi; Bradford J Smith; Reza Avazmohammadi
Journal:  J R Soc Interface       Date:  2022-06-08       Impact factor: 4.293

Review 3.  Genetic Delivery and Gene Therapy in Pulmonary Hypertension.

Authors:  Nabham Rai; Mazen Shihan; Werner Seeger; Ralph T Schermuly; Tatyana Novoyatleva
Journal:  Int J Mol Sci       Date:  2021-01-25       Impact factor: 5.923

4.  Serum calprotectin as new biomarker for disease severity in idiopathic pulmonary fibrosis: a cross-sectional study in two independent cohorts.

Authors:  Carlos Machahua; Sabina A Guler; Michael P Horn; Lurdes Planas-Cerezales; Ana Montes-Worboys; Thomas K Geiser; Maria Molina-Molina; Manuela Funke-Chambour
Journal:  BMJ Open Respir Res       Date:  2021-01

5.  Elevated Serum Amyloid a Levels Are not Specific for Sarcoidosis but Associate with a Fibrotic Pulmonary Phenotype.

Authors:  Els Beijer; Claudia Roodenburg-Benschop; Milou C Schimmelpennink; Jan C Grutters; Bob Meek; Marcel Veltkamp
Journal:  Cells       Date:  2021-03-07       Impact factor: 6.600

6.  Mycobacterium tuberculosis Load in Host Cells and the Antibacterial Activity of Alveolar Macrophages Are Linked and Differentially Regulated in Various Lung Lesions of Patients with Pulmonary Tuberculosis.

Authors:  Elena G Ufimtseva; Natalya I Eremeeva; Tatiana V Umpeleva; Diana V Vakhrusheva; Sergey N Skornyakov
Journal:  Int J Mol Sci       Date:  2021-03-26       Impact factor: 5.923

7.  Multiscale modeling in disease.

Authors:  Ashlee N Ford Versypt
Journal:  Curr Opin Syst Biol       Date:  2021-05-08
  7 in total

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