Literature DB >> 27265851

The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly.

Michael A DiMattia1, Norman R Watts2, Naiqian Cheng3, Rick Huang3, J Bernard Heymann3, Jonathan M Grimes4, Paul T Wingfield2, David I Stuart4, Alasdair C Steven5.   

Abstract

HIV-1 Rev protein mediates the nuclear export of viral RNA genomes. To do so, Rev oligomerizes cooperatively onto an RNA motif, the Rev response element (RRE), forming a complex that engages with the host nuclear export machinery. To better understand Rev oligomerization, we determined four crystal structures of Rev N-terminal domain dimers, which show that they can pivot about their dyad axis, giving crossing angles of 90° to 140°. In parallel, we performed cryoelectron microscopy of helical Rev filaments. Filaments vary from 11 to 15 nm in width, reflecting variations in dimer crossing angle. These structures contain additional density, indicating that C-terminal domains become partially ordered in the context of filaments. This conformational variability may be exploited in the assembly of RRE/Rev complexes. Our data also revealed a third interface between Revs, which offers an explanation for how the arrangement of Rev subunits adapts to the "A"-shaped architecture of the RRE in export-active complexes. Published by Elsevier Ltd.

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Year:  2016        PMID: 27265851      PMCID: PMC4938712          DOI: 10.1016/j.str.2016.04.015

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  56 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Identification of a regulated pathway for nuclear pre-mRNA turnover.

Authors:  C Bousquet-Antonelli; C Presutti; D Tollervey
Journal:  Cell       Date:  2000-09-15       Impact factor: 41.582

3.  Bsoft: image processing and molecular modeling for electron microscopy.

Authors:  J Bernard Heymann; David M Belnap
Journal:  J Struct Biol       Date:  2006-06-28       Impact factor: 2.867

4.  HIV-1 Rev expressed in recombinant Escherichia coli: purification, polymerization, and conformational properties.

Authors:  P T Wingfield; S J Stahl; M A Payton; S Venkatesan; M Misra; A C Steven
Journal:  Biochemistry       Date:  1991-07-30       Impact factor: 3.162

Review 5.  The HIV-1 Rev protein.

Authors:  V W Pollard; M H Malim
Journal:  Annu Rev Microbiol       Date:  1998       Impact factor: 15.500

6.  Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function.

Authors:  Venkat S R K Yedavalli; Christine Neuveut; Ya-Hui Chi; Lawrence Kleiman; Kuan-Teh Jeang
Journal:  Cell       Date:  2004-10-29       Impact factor: 41.582

7.  Generation and characterization of a chimeric rabbit/human Fab for co-crystallization of HIV-1 Rev.

Authors:  Stephen J Stahl; Norman R Watts; Christoph Rader; Michael A DiMattia; Rose G Mage; Ira Palmer; Joshua D Kaufman; Jonathan M Grimes; David I Stuart; Alasdair C Steven; Paul T Wingfield
Journal:  J Mol Biol       Date:  2010-02-04       Impact factor: 5.469

8.  The basic domain of Rev from human immunodeficiency virus type 1 specifically blocks the entry of U4/U6.U5 small nuclear ribonucleoprotein in spliceosome assembly.

Authors:  J Kjems; P A Sharp
Journal:  J Virol       Date:  1993-08       Impact factor: 5.103

9.  Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes.

Authors:  Stephen P Edgcomb; Angelique Aschrafi; Elizabeth Kompfner; James R Williamson; Larry Gerace; Mirko Hennig
Journal:  Protein Sci       Date:  2008-01-24       Impact factor: 6.725

Review 10.  HIV Rev Assembly on the Rev Response Element (RRE): A Structural Perspective.

Authors:  Jason W Rausch; Stuart F J Le Grice
Journal:  Viruses       Date:  2015-06-12       Impact factor: 5.048

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  15 in total

1.  Chimeric rabbit/human Fab antibodies against the hepatitis Be-antigen and their potential applications in assays, characterization, and therapy.

Authors:  Xiaolei Zhuang; Norman R Watts; Ira W Palmer; Joshua D Kaufman; Altaira D Dearborn; Joni L Trenbeath; Elif Eren; Alasdair C Steven; Christoph Rader; Paul T Wingfield
Journal:  J Biol Chem       Date:  2017-08-23       Impact factor: 5.157

2.  Nuclear Export Signal Masking Regulates HIV-1 Rev Trafficking and Viral RNA Nuclear Export.

Authors:  Ryan T Behrens; Mounavya Aligeti; Ginger M Pocock; Christina A Higgins; Nathan M Sherer
Journal:  J Virol       Date:  2017-01-18       Impact factor: 5.103

3.  Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs.

Authors:  J Bernard Heymann
Journal:  Protein Sci       Date:  2017-10-09       Impact factor: 6.725

4.  Single particle reconstruction and validation using Bsoft for the map challenge.

Authors:  J Bernard Heymann
Journal:  J Struct Biol       Date:  2018-07-05       Impact factor: 2.867

5.  Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.

Authors:  Ina P O'Carroll; Lixin Fan; Tomáš Kroupa; Erin K McShane; Christophe Theodore; Elizabeth A Yates; Benjamin Kondrup; Jienyu Ding; Tyler S Martin; Alan Rein; Yun-Xing Wang
Journal:  J Mol Biol       Date:  2020-11-14       Impact factor: 5.469

6.  A new HIV-1 Rev structure optimizes interaction with target RNA (RRE) for nuclear export.

Authors:  Norman R Watts; Elif Eren; Xiaolei Zhuang; Yun-Xing Wang; Alasdair C Steven; Paul T Wingfield
Journal:  J Struct Biol       Date:  2018-03-29       Impact factor: 2.867

7.  Structure of an RNA Aptamer that Can Inhibit HIV-1 by Blocking Rev-Cognate RNA (RRE) Binding and Rev-Rev Association.

Authors:  Altaira D Dearborn; Elif Eren; Norman R Watts; Ira W Palmer; Joshua D Kaufman; Alasdair C Steven; Paul T Wingfield
Journal:  Structure       Date:  2018-07-12       Impact factor: 5.006

8.  Premature Stop Codon at Residue 101 within HIV-1 Rev Does Not Influence Viral Replication of Clade BC but Severely Reduces Viral Fitness of Clade B.

Authors:  Zheng Wang; Xiaolin Ji; Yanling Hao; Kunxue Hong; Liying Ma; Dan Li; Yiming Shao
Journal:  Virol Sin       Date:  2019-12-11       Impact factor: 4.327

9.  Sequence and Functional Variation in the HIV-1 Rev Regulatory Axis.

Authors:  Patrick E H Jackson; Godfrey Dzhivhuho; David Rekosh; Marie-Louise Hammarskjold
Journal:  Curr HIV Res       Date:  2020       Impact factor: 1.581

10.  Identification of host proteins differentially associated with HIV-1 RNA splice variants.

Authors:  Rachel Knoener; Edward Evans; Jordan T Becker; Mark Scalf; Bayleigh Benner; Nathan M Sherer; Lloyd M Smith
Journal:  Elife       Date:  2021-02-25       Impact factor: 8.140

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