Literature DB >> 18218716

Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes.

Stephen P Edgcomb1, Angelique Aschrafi, Elizabeth Kompfner, James R Williamson, Larry Gerace, Mirko Hennig.   

Abstract

The translation of the unspliced and partially spliced viral mRNAs that encode the late, structural proteins of HIV-1 depends on the viral-protein Rev. Oligomeric binding of Rev to the Rev response element (RRE) in these mRNAs promotes their export from the nucleus and thus controls their expression. Here, we compared the effects of hydrophobic to hydrophilic mutations within the oligomerization domain of Rev using assays for oligomeric RNA binding, protein structure, and export from the nucleus. Oligomeric RNA binding alone does not correlate well with RNA transport activity in the subset of mutants. However, protein structure as judged by CD spectroscopy does correlate well with Rev function. The oligomeric assembly of Rev-L18T is impaired but exhibits minor defects in structure and retains a basal level of activity in vivo. The prevalence of L18T in infected individuals suggests a positive selection mechanism for L18T modulation of Rev activity that may delay the onset of AIDS.

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Year:  2008        PMID: 18218716      PMCID: PMC2248316          DOI: 10.1110/ps.073246608

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  55 in total

1.  Inhibition of HIV replication by dominant negative mutants of Sam68, a functional homolog of HIV-1 Rev.

Authors:  T R Reddy; W Xu; J K Mau; C D Goodwin; M Suhasini; H Tang; K Frimpong; D W Rose; F Wong-Staal
Journal:  Nat Med       Date:  1999-06       Impact factor: 53.440

2.  Sensitive in vitro analysis of HIV-1 Rev multimerization.

Authors:  P C Brice; A C Kelley; P J Butler
Journal:  Nucleic Acids Res       Date:  1999-05-15       Impact factor: 16.971

Review 3.  The ins and outs of HIV Rev.

Authors:  T J Hope
Journal:  Arch Biochem Biophys       Date:  1999-05-15       Impact factor: 4.013

4.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  HIV-1 structural gene expression requires the binding of multiple Rev monomers to the viral RRE: implications for HIV-1 latency.

Authors:  M H Malim; B R Cullen
Journal:  Cell       Date:  1991-04-19       Impact factor: 41.582

6.  Alterations in HIV-1 Rev transport in response to cell stress.

Authors:  V Soros; A Cochrane
Journal:  Virology       Date:  2001-02-15       Impact factor: 3.616

7.  Constraints on protein structure in HIV-1 Rev and Rev-RNA supramolecular assemblies from two-dimensional solid state nuclear magnetic resonance.

Authors:  Robert H Havlin; Francisco J Blanco; Robert Tycko
Journal:  Biochemistry       Date:  2007-02-21       Impact factor: 3.162

8.  Efforts toward deriving the CD spectrum of a 3(10) helix in aqueous medium.

Authors:  N H Andersen; Z Liu; K S Prickett
Journal:  FEBS Lett       Date:  1996-12-09       Impact factor: 4.124

9.  Dominant negative mutants of human T-cell leukemia virus type I Rex and human immunodeficiency virus type 1 Rev fail to multimerize in vivo.

Authors:  H Bogerd; W C Greene
Journal:  J Virol       Date:  1993-05       Impact factor: 5.103

10.  Costabilization of peptide and RNA structure in an HIV Rev peptide-RRE complex.

Authors:  R Tan; A D Frankel
Journal:  Biochemistry       Date:  1994-12-06       Impact factor: 3.162

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  25 in total

1.  The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA.

Authors:  Elena Menichelli; Stephen P Edgcomb; Michael I Recht; James R Williamson
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

2.  Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production.

Authors:  Souad Naji; Géza Ambrus; Peter Cimermančič; Jason R Reyes; Jeffrey R Johnson; Rebecca Filbrandt; Michael D Huber; Paul Vesely; Nevan J Krogan; John R Yates; Andrew C Saphire; Larry Gerace
Journal:  Mol Cell Proteomics       Date:  2011-12-15       Impact factor: 5.911

3.  Implications of the HIV-1 Rev dimer structure at 3.2 A resolution for multimeric binding to the Rev response element.

Authors:  Michael A DiMattia; Norman R Watts; Stephen J Stahl; Christoph Rader; Paul T Wingfield; David I Stuart; Alasdair C Steven; Jonathan M Grimes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

4.  HIV-1 Rev protein assembles on viral RNA one molecule at a time.

Authors:  Stephanie J K Pond; William K Ridgeway; Rae Robertson; Jun Wang; David P Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

5.  A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev Response Element.

Authors:  John A Hammond; Rajan Lamichhane; David P Millar; James R Williamson
Journal:  J Mol Biol       Date:  2017-01-31       Impact factor: 5.469

6.  Measuring cooperative Rev protein-protein interactions on Rev responsive RNA by fluorescence resonance energy transfer.

Authors:  Thomas Vercruysse; Sonalika Pawar; Wim De Borggraeve; Els Pardon; George N Pavlakis; Christophe Pannecouque; Jan Steyaert; Jan Balzarini; Dirk Daelemans
Journal:  RNA Biol       Date:  2011-03-01       Impact factor: 4.652

7.  A Survey of DDX21 Activity During Rev/RRE Complex Formation.

Authors:  John A Hammond; Li Zhou; Rajan Lamichhane; Hui-Yi Chu; David P Millar; Larry Gerace; James R Williamson
Journal:  J Mol Biol       Date:  2017-07-10       Impact factor: 5.469

8.  Rapid and efficient purification of RNA-binding proteins: application to HIV-1 Rev.

Authors:  Marco Marenchino; David W Armbruster; Mirko Hennig
Journal:  Protein Expr Purif       Date:  2008-09-25       Impact factor: 1.650

9.  Structural basis for cooperative RNA binding and export complex assembly by HIV Rev.

Authors:  Matthew D Daugherty; Bella Liu; Alan D Frankel
Journal:  Nat Struct Mol Biol       Date:  2010-10-17       Impact factor: 15.369

10.  A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA.

Authors:  Matthew D Daugherty; Iván D'Orso; Alan D Frankel
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

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