Literature DB >> 27262052

Destruction-and-diffraction by X-ray free-electron laser.

Jimin Wang1.   

Abstract

It is common knowledge that macromolecular crystals are damaged by the X-rays they are exposed to during conventional data collection. One of the claims made about the crystallographic data collection now being collected using X-ray free-electron lasers (XFEL) is that they are unaffected by radiation damage. XFEL data sets are assembled by merging data obtained from a very large number of crystals, each of which is exposed to a single femtosecond pulse of radiation, the duration of which is so short that diffraction occurs before the damage done to the crystal has time to become manifest, i.e. "diffraction-before-destruction." However, recent theoretical studies have shown that many of the elemental electronic processes that ultimately result in the destruction of such crystals occur during a single pulse. It is predicted that the amplitudes of atomic scattering factor could be reduced by as much as 75% within the first 5 femtoseconds of such pulses, and that different atoms will respond in different ways. Experimental evidence is provided here that these predictions are correct.
© 2016 The Protein Society.

Entities:  

Keywords:  XFEL; atomic scattering factors; cytochrome c oxidase; cytochrome c peroxidase; metalloproteins; photosystem II; radiation damage

Mesh:

Substances:

Year:  2016        PMID: 27262052      PMCID: PMC5338243          DOI: 10.1002/pro.2959

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  Unit-cell volume change as a metric of radiation damage in crystals of macromolecules.

Authors:  Raimond B G Ravelli; Pascal Theveneau; Sean McSweeney; Martin Caffrey
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

3.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

4.  Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69.

Authors:  J Wang; A K Sattar; C C Wang; J D Karam; W H Konigsberg; T A Steitz
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

5.  Efficient calculation of diffracted intensities in the case of nonstationary scattering by biological macromolecules under XFEL pulses.

Authors:  Vladimir Y Lunin; Alexei N Grum-Grzhimailo; Elena V Gryzlova; Dmitry O Sinitsyn; Tatiana E Petrova; Natalia L Lunina; Nikolai K Balabaev; Ksenia B Tereshkina; Alexei S Stepanov; Yurii F Krupyanskii
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-23

6.  Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.

Authors:  Kunio Hirata; Kyoko Shinzawa-Itoh; Naomine Yano; Shuhei Takemura; Koji Kato; Miki Hatanaka; Kazumasa Muramoto; Takako Kawahara; Tomitake Tsukihara; Eiki Yamashita; Kensuke Tono; Go Ueno; Takaaki Hikima; Hironori Murakami; Yuichi Inubushi; Makina Yabashi; Tetsuya Ishikawa; Masaki Yamamoto; Takashi Ogura; Hiroshi Sugimoto; Jian-Ren Shen; Shinya Yoshikawa; Hideo Ago
Journal:  Nat Methods       Date:  2014-05-11       Impact factor: 28.547

7.  X-ray radiation-induced addition of oxygen atoms to protein residues.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-07-08       Impact factor: 6.725

8.  Crystallography of ribosomes: attempts at decorating the ribosomal surface.

Authors:  I Sagi; V Weinrich; I Levin; C Glotz; M Laschever; M Melamud; F Franceschi; S Weinstein; A Yonath
Journal:  Biophys Chem       Date:  1995 Jun-Jul       Impact factor: 2.352

9.  Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate.

Authors:  Yergalem T Meharenna; Tzanko Doukov; Huiying Li; S Michael Soltis; Thomas L Poulos
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

10.  Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses.

Authors:  Michihiro Suga; Fusamichi Akita; Kunio Hirata; Go Ueno; Hironori Murakami; Yoshiki Nakajima; Tetsuya Shimizu; Keitaro Yamashita; Masaki Yamamoto; Hideo Ago; Jian-Ren Shen
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

View more
  2 in total

1.  Oxygen additions in serial femtosecond crystallographic protein structures.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-07-26       Impact factor: 6.725

2.  Crystallographic Data Support the Carousel Mechanism of Water Supply to the Oxygen-Evolving Complex of Photosystem II.

Authors:  Jimin Wang; Mikhail Askerka; Gary W Brudvig; Victor S Batista
Journal:  ACS Energy Lett       Date:  2017-09-07       Impact factor: 23.101

  2 in total

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