Literature DB >> 27260449

Establishment of local searching methods for orbitrap-based high throughput metabolomics analysis.

Haiping Tang1, Xueying Wang2, Lina Xu2, Xiaorong Ran3, Xiangjun Li3, Ligong Chen4, Xinbin Zhao4, Haiteng Deng5, Xiaohui Liu6.   

Abstract

Our method aims to establish local endogenous metabolite databases economically without purchasing chemical standards, giving strong bases for following orbitrap based high throughput untargeted metabolomics analysis. A new approach here is introduced to construct metabolite databases on the base of biological sample analysis and mathematic extrapolation. Building local metabolite databases traditionally requires expensive chemical standards, which is barely affordable for most research labs. As a result, most labs working on metabolomics analysis have to refer public libraries, which is time consuming and limited for high throughput analysis. Using this strategy, a high throughput orbitrap based metabolomics platform can be established at almost no cost within a couple of months. It enables to facilitate the application of high throughput metabolomics analysis to identify disease-related biomarkers or investigate biological functions using orbitrap.
Copyright © 2016 Elsevier B.V. All rights reserved.

Keywords:  ID-based metabolomics analysis; In-house endogenous databases; LC-MS/MS; Orbitrap

Year:  2016        PMID: 27260449     DOI: 10.1016/j.talanta.2016.04.051

Source DB:  PubMed          Journal:  Talanta        ISSN: 0039-9140            Impact factor:   6.057


  15 in total

Review 1.  Identification of small molecules using accurate mass MS/MS search.

Authors:  Tobias Kind; Hiroshi Tsugawa; Tomas Cajka; Yan Ma; Zijuan Lai; Sajjan S Mehta; Gert Wohlgemuth; Dinesh Kumar Barupal; Megan R Showalter; Masanori Arita; Oliver Fiehn
Journal:  Mass Spectrom Rev       Date:  2017-04-24       Impact factor: 10.946

2.  Lipidomic and Transcriptomic Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs.

Authors:  Zhiwang Zhang; Qichao Liao; Yu Sun; Tingli Pan; Siqi Liu; Weiwei Miao; Yixing Li; Lei Zhou; Gaoxiao Xu
Journal:  Front Nutr       Date:  2021-05-07

3.  Identifying Lipid Metabolites Influenced by Oleic Acid Administration Using High-Performance Liquid Chromatography-Mass Spectrometry-Based Lipidomics.

Authors:  Chao Xu; Dan Song; Askild L Holck; Youyou Zhou; Rong Liu
Journal:  ACS Omega       Date:  2020-04-29

4.  Non-Targeted Metabolomic Profiling of Coronary Heart Disease Patients With Taohong Siwu Decoction Treatment.

Authors:  Tianqi Tao; Tao He; Huimin Mao; Xudong Wu; Xiuhua Liu
Journal:  Front Pharmacol       Date:  2020-05-08       Impact factor: 5.810

5.  Combined transcriptomic and lipidomic analysis of D-4F ameliorating bleomycin-induced pulmonary fibrosis.

Authors:  Yong Xia; Mei Cheng; Yanyan Hu; Man Li; Lin Shen; Xiang Ji; Xiaopei Cui; Xiangju Liu; Weiling Wang; Haiqing Gao
Journal:  Ann Transl Med       Date:  2021-09

6.  Metabolomics profiling of methamphetamine addicted human serum and three rat brain areas.

Authors:  Ming Lin; Jiamin Xu; Xi Liu; Zhenfeng Dai; Zhimin Liu; Xin Zhao; Yi Sun; Xiaoping Pu
Journal:  RSC Adv       Date:  2019-12-12       Impact factor: 4.036

7.  A CRISPR knockout negative screen reveals synergy between CDKs inhibitor and metformin in the treatment of human cancer in vitro and in vivo.

Authors:  Yarui Ma; Qing Zhu; Junbo Liang; Yifei Li; Mo Li; Ying Zhang; Xiaobing Wang; Yixin Zeng; Yuchen Jiao
Journal:  Signal Transduct Target Ther       Date:  2020-08-19

8.  Characterization and reutilization potential of lipids in sludges from wastewater treatment processes.

Authors:  Shuai Liu; Tao Luo; Guo-Hua Liu; Xianglong Xu; Yuting Shao; Lu Qi; Hongchen Wang
Journal:  Sci Rep       Date:  2020-08-03       Impact factor: 4.379

Review 9.  Bridging Targeted and Untargeted Mass Spectrometry-Based Metabolomics via Hybrid Approaches.

Authors:  Li Chen; Fanyi Zhong; Jiangjiang Zhu
Journal:  Metabolites       Date:  2020-08-27

10.  Shared and Specific Lung Microbiota with Metabolic Profiles in Bronchoalveolar Lavage Fluid Between Infectious and Inflammatory Respiratory Diseases.

Authors:  Yukun He; Wenyi Yu; Pu Ning; Qiongzhen Luo; Lili Zhao; Yu Xie; Yan Yu; Xinqian Ma; Li Chen; Yali Zheng; Zhancheng Gao
Journal:  J Inflamm Res       Date:  2022-01-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.