Literature DB >> 27256389

Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System.

Xicotencatl Gracida1, Adam D Norris1, John A Calarco2.   

Abstract

Alternative pre-mRNA splicing serves as an elegant mechanism for generating transcriptomic and proteomic diversity between cell and tissue types. In this chapter, we highlight key concepts and outstanding goals in studies of tissue and cell-specific alternative splicing. We place particular emphasis on the use of C. elegans as a tractable model organism for in vivo studies of alternative splicing between tissues and also at single cell resolution. We describe our current understanding of tissue and cell-specific regulation in the animal, and emerging techniques that will allow for future mechanistic studies as well as systems level investigations of spatio-temporal splicing under laboratory conditions and in response to environmental stimuli.

Entities:  

Keywords:  Alternative splicing; C. elegans; RNA processing; Tissue-specific regulation

Mesh:

Substances:

Year:  2016        PMID: 27256389     DOI: 10.1007/978-3-319-29073-7_10

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  8 in total

1.  Caenorhabditis elegans PRMT-7 and PRMT-9 Are Evolutionarily Conserved Protein Arginine Methyltransferases with Distinct Substrate Specificities.

Authors:  Andrea Hadjikyriacou; Steven G Clarke
Journal:  Biochemistry       Date:  2017-05-09       Impact factor: 3.162

Review 2.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

3.  The combinatorial control of alternative splicing in C. elegans.

Authors:  June H Tan; Andrew G Fraser
Journal:  PLoS Genet       Date:  2017-11-09       Impact factor: 5.917

4.  Splicing in a single neuron is coordinately controlled by RNA binding proteins and transcription factors.

Authors:  Morgan Thompson; Ryan Bixby; Robert Dalton; Alexa Vandenburg; John A Calarco; Adam D Norris
Journal:  Elife       Date:  2019-07-19       Impact factor: 8.140

5.  Synthetic Genetic Interaction (CRISPR-SGI) Profiling in Caenorhabditis elegans.

Authors:  John A Calarco; Adam D Norris
Journal:  Bio Protoc       Date:  2018-03-05

6.  Global regulatory features of alternative splicing across tissues and within the nervous system of C. elegans.

Authors:  Bina Koterniak; Pallavi P Pilaka; Xicotencatl Gracida; Lisa-Marie Schneider; Iva Pritišanac; Yun Zhang; John A Calarco
Journal:  Genome Res       Date:  2020-10-30       Impact factor: 9.043

7.  Sensory neuron transcriptomes reveal complex neuron-specific function and regulation of mec-2/Stomatin splicing.

Authors:  Xiaoyu Liang; Canyon Calovich-Benne; Adam Norris
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

8.  Spliceosomal component PRP-40 is a central regulator of microexon splicing.

Authors:  Bikash Choudhary; Olivia Marx; Adam D Norris
Journal:  Cell Rep       Date:  2021-08-03       Impact factor: 9.423

  8 in total

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