Literature DB >> 27246709

Cell fate control by pioneer transcription factors.

Makiko Iwafuchi-Doi1, Kenneth S Zaret2.   

Abstract

Distinct combinations of transcription factors are necessary to elicit cell fate changes in embryonic development. Yet within each group of fate-changing transcription factors, a subset called 'pioneer factors' are dominant in their ability to engage silent, unmarked chromatin and initiate the recruitment of other factors, thereby imparting new function to regulatory DNA sequences. Recent studies have shown that pioneer factors are also crucial for cellular reprogramming and that they are implicated in the marked changes in gene regulatory networks that occur in various cancers. Here, we provide an overview of the contexts in which pioneer factors function, how they can target silent genes, and their limitations at regions of heterochromatin. Understanding how pioneer factors regulate gene expression greatly enhances our understanding of how specific developmental lineages are established as well as how cell fates can be manipulated.
© 2016. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Cell fate control; Pioneer factors; Transcription

Mesh:

Substances:

Year:  2016        PMID: 27246709      PMCID: PMC6514407          DOI: 10.1242/dev.133900

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  64 in total

1.  An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA.

Authors:  L A Cirillo; K S Zaret
Journal:  Mol Cell       Date:  1999-12       Impact factor: 17.970

Review 2.  Developmental competence of the gut endoderm: genetic potentiation by GATA and HNF3/fork head proteins.

Authors:  K Zaret
Journal:  Dev Biol       Date:  1999-05-01       Impact factor: 3.582

3.  Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.

Authors:  Lisa Ann Cirillo; Frank Robert Lin; Isabel Cuesta; Dara Friedman; Michal Jarnik; Kenneth S Zaret
Journal:  Mol Cell       Date:  2002-02       Impact factor: 17.970

4.  Oct-3/4 is a dose-dependent oncogenic fate determinant.

Authors:  Sharon Gidekel; Galina Pizov; Yehudit Bergman; Eli Pikarsky
Journal:  Cancer Cell       Date:  2003-11       Impact factor: 31.743

5.  Pbx marks genes for activation by MyoD indicating a role for a homeodomain protein in establishing myogenic potential.

Authors:  Charlotte A Berkes; Donald A Bergstrom; Bennett H Penn; Karen J Seaver; Paul S Knoepfler; Stephen J Tapscott
Journal:  Mol Cell       Date:  2004-05-21       Impact factor: 17.970

6.  Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

Authors:  J Gaudet; S E Mango
Journal:  Science       Date:  2002-02-01       Impact factor: 47.728

7.  Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Authors:  Jason S Carroll; X Shirley Liu; Alexander S Brodsky; Wei Li; Clifford A Meyer; Anna J Szary; Jerome Eeckhoute; Wenlin Shao; Eli V Hestermann; Timothy R Geistlinger; Edward A Fox; Pamela A Silver; Myles Brown
Journal:  Cell       Date:  2005-07-15       Impact factor: 41.582

8.  The initiation of liver development is dependent on Foxa transcription factors.

Authors:  Catherine S Lee; Joshua R Friedman; James T Fulmer; Klaus H Kaestner
Journal:  Nature       Date:  2005-06-16       Impact factor: 49.962

9.  Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss.

Authors:  Haiying Zhang; Douglas N Roberts; Bradley R Cairns
Journal:  Cell       Date:  2005-10-21       Impact factor: 41.582

10.  Repressive and restrictive mesodermal interactions with gut endoderm: possible relation to Meckel's Diverticulum.

Authors:  P Bossard; K S Zaret
Journal:  Development       Date:  2000-11       Impact factor: 6.868

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  114 in total

1.  Structure of Nascent Chromatin Is Essential for Hematopoietic Lineage Specification.

Authors:  Svetlana Petruk; Samanta A Mariani; Marco De Dominici; Patrizia Porazzi; Valentina Minieri; Jingli Cai; Lorraine Iacovitti; Neal Flomenberg; Bruno Calabretta; Alexander Mazo
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

2.  The transcription factor Hey and nuclear lamins specify and maintain cell identity.

Authors:  Naama Flint Brodsly; Eliya Bitman-Lotan; Olga Boico; Adi Shafat; Maria Monastirioti; Manfred Gessler; Christos Delidakis; Hector Rincon-Arano; Amir Orian
Journal:  Elife       Date:  2019-07-16       Impact factor: 8.140

Review 3.  Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling.

Authors:  John L Johnson; Golnaz Vahedi
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-03-01       Impact factor: 10.005

4.  A small-molecule screen reveals that HSP90β promotes the conversion of induced pluripotent stem cell-derived endoderm to a hepatic fate and regulates HNF4A turnover.

Authors:  Ran Jing; Cameron B Duncan; Stephen A Duncan
Journal:  Development       Date:  2017-03-30       Impact factor: 6.868

5.  A nucleosome-free region locally abrogates histone H1-dependent restriction of linker DNA accessibility in chromatin.

Authors:  Laxmi Narayan Mishra; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2018-10-29       Impact factor: 5.157

6.  Asf1a resolves bivalent chromatin domains for the induction of lineage-specific genes during mouse embryonic stem cell differentiation.

Authors:  Yuan Gao; Haiyun Gan; Zhenkun Lou; Zhiguo Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

7.  Negative reciprocity, not ordered assembly, underlies the interaction of Sox2 and Oct4 on DNA.

Authors:  John W Biddle; Maximilian Nguyen; Jeremy Gunawardena
Journal:  Elife       Date:  2019-02-14       Impact factor: 8.140

Review 8.  A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs.

Authors:  Rebekah M Charney; Kitt D Paraiso; Ira L Blitz; Ken W Y Cho
Journal:  Semin Cell Dev Biol       Date:  2017-03-22       Impact factor: 7.727

Review 9.  Pioneer factors and their in vitro identification methods.

Authors:  Xinyang Yu; Michael J Buck
Journal:  Mol Genet Genomics       Date:  2020-04-15       Impact factor: 3.291

Review 10.  Fox transcription factors: from development to disease.

Authors:  Maria L Golson; Klaus H Kaestner
Journal:  Development       Date:  2016-12-15       Impact factor: 6.868

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