Literature DB >> 27236212

Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V.

Myron F Goodman1, John P McDonald2, Malgorzata M Jaszczur3, Roger Woodgate4.   

Abstract

It is now close to 40 years since the isolation of non-mutable umu/uvm strains of Escherichia coli and the realization that damage induced mutagenesis in E.coli is not a passive process. Early models of mutagenesis envisioned the Umu proteins as accessory factors to the cell's replicase that not only reduced its normally high fidelity, but also allowed the enzyme to traverse otherwise replication-blocking lesions in the genome. However, these models underwent a radical revision approximately 15 years ago, with the discovery that the Umu proteins actually encode for a DNA polymerase, E.coli pol V. The polymerase lacks 3'→5' exonucleolytic proofreading activity and is inherently error-prone when replicating both undamaged and damage DNA. So as to limit any "gratuitous" mutagenesis, the activity of pol V is strictly regulated in the cell at multiple levels. This review will summarize our current understanding of the myriad levels of regulation imposed on pol V including transcriptional control, posttranslational modification, targeted proteolysis, activation of the catalytic activity of pol V through protein-protein interactions and the very recently described intracellular spatial regulation of pol V. Remarkably, despite the multiple levels at which pol V is regulated, the enzyme is nevertheless able to contribute to the genetic diversity and evolutionary fitness of E.coli. Published by Elsevier B.V.

Entities:  

Keywords:  Posttranslational regulation; Proteolysis; Translesion DNA synthesis; Y-family DNA polymerase

Mesh:

Substances:

Year:  2016        PMID: 27236212      PMCID: PMC4958523          DOI: 10.1016/j.dnarep.2016.05.005

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  72 in total

1.  A model for SOS-lesion-targeted mutations in Escherichia coli.

Authors:  P Pham; J G Bertram; M O'Donnell; R Woodgate; M F Goodman
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

2.  Distribution among incompatibility groups of plasmids that confer UV mutability and UV resistance.

Authors:  R J Pinney
Journal:  Mutat Res       Date:  1980-08       Impact factor: 2.433

3.  Influence of RecA protein on induced mutagenesis.

Authors:  M Blanco; G Herrera; P Collado; J E Rebollo; L M Botella
Journal:  Biochimie       Date:  1982 Aug-Sep       Impact factor: 4.079

4.  Inducibility of a gene product required for UV and chemical mutagenesis in Escherichia coli.

Authors:  A Bagg; C J Kenyon; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1981-09       Impact factor: 11.205

5.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

6.  A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems.

Authors:  B P Dalrymple; K Kongsuwan; G Wijffels; N E Dixon; P A Jennings
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

7.  Dimer exchange and cleavage specificity of the DNA damage response protein UmuD.

Authors:  Jaylene N Ollivierre; Jacquelyn L Sikora; Penny J Beuning
Journal:  Biochim Biophys Acta       Date:  2012-12-07

8.  Structural insights into the regulation of SOS mutagenesis.

Authors:  M Gonzalez; E G Frank; J P McDonald; A S Levine; R Woodgate
Journal:  Acta Biochim Pol       Date:  1998       Impact factor: 2.149

9.  Mutagenic DNA repair in enterobacteria.

Authors:  S G Sedgwick; C Ho; R Woodgate
Journal:  J Bacteriol       Date:  1991-09       Impact factor: 3.490

10.  Selection of DNA binding sites by regulatory proteins: the LexA protein and the arginine repressor use different strategies for functional specificity.

Authors:  O G Berg
Journal:  Nucleic Acids Res       Date:  1988-06-10       Impact factor: 16.971

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  17 in total

1.  Single-cell mutagenic responses and cell death revealed in real time.

Authors:  Bennett Van Houten; Neil M Kad
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

2.  A gatekeeping function of the replicative polymerase controls pathway choice in the resolution of lesion-stalled replisomes.

Authors:  Seungwoo Chang; Karel Naiman; Elizabeth S Thrall; James E Kath; Slobodan Jergic; Nicholas E Dixon; Robert P Fuchs; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-03       Impact factor: 11.205

3.  Antibiotic-induced DNA damage results in a controlled loss of pH homeostasis and genome instability.

Authors:  James Alexander Booth; Mário Špírek; Tekle Airgecho Lobie; Kirsten Skarstad; Lumir Krejci; Magnar Bjørås
Journal:  Sci Rep       Date:  2020-11-10       Impact factor: 4.379

4.  Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391.

Authors:  Erin Walsh; Sarah S Henrikus; Alexandra Vaisman; Karolina Makiela-Dzbenska; Thomas J Armstrong; Krystian Łazowski; John P McDonald; Myron F Goodman; Antoine M van Oijen; Piotr Jonczyk; Iwona J Fijalkowska; Andrew Robinson; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2019-08-10

5.  RecA-independent recombination: Dependence on the Escherichia coli RarA protein.

Authors:  Kanika Jain; Elizabeth A Wood; Zachary J Romero; Michael M Cox
Journal:  Mol Microbiol       Date:  2020-12-19       Impact factor: 3.979

Review 6.  Translesion Synthesis: Insights into the Selection and Switching of DNA Polymerases.

Authors:  Linlin Zhao; M Todd Washington
Journal:  Genes (Basel)       Date:  2017-01-10       Impact factor: 4.096

7.  Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair.

Authors:  Sarah S Henrikus; Camille Henry; Amy E McGrath; Slobodan Jergic; John P McDonald; Yvonne Hellmich; Steven T Bruckbauer; Matthew L Ritger; Megan E Cherry; Elizabeth A Wood; Phuong T Pham; Myron F Goodman; Roger Woodgate; Michael M Cox; Antoine M van Oijen; Harshad Ghodke; Andrew Robinson
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

8.  New insights into the structures and interactions of bacterial Y-family DNA polymerases.

Authors:  Kęstutis Timinskas; Česlovas Venclovas
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

Review 9.  The SOS system: A complex and tightly regulated response to DNA damage.

Authors:  Katarzyna H Maslowska; Karolina Makiela-Dzbenska; Iwona J Fijalkowska
Journal:  Environ Mol Mutagen       Date:  2019-01-07       Impact factor: 3.216

10.  Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP.

Authors:  Malgorzata M Jaszczur; Dan D Vo; Ramunas Stanciauskas; Jeffrey G Bertram; Adhirath Sikand; Michael M Cox; Roger Woodgate; Chi H Mak; Fabien Pinaud; Myron F Goodman
Journal:  PLoS Genet       Date:  2019-02-04       Impact factor: 5.917

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