Literature DB >> 27234044

Environmental Health and Long Non-coding RNAs.

Oskar Karlsson1,2, Andrea A Baccarelli3.   

Abstract

An individual's risk of developing a common disease typically depends on an interaction of genetic and environmental factors. Epigenetic research is uncovering novel ways through which environmental factors such as diet, air pollution, and chemical exposure can affect our genes. DNA methylation and histone modifications are the most commonly studied epigenetic mechanisms. The role of long non-coding RNAs (lncRNAs) in epigenetic processes has been more recently highlighted. LncRNAs are defined as transcribed RNA molecules greater than 200 nucleotides in length with little or no protein-coding capability. While few functional lncRNAs have been well characterized to date, they have been demonstrated to control gene regulation at every level, including transcriptional gene silencing via regulation of the chromatin structure and DNA methylation. This review aims to provide a general overview of lncRNA function with a focus on their role as key regulators of health and disease and as biomarkers of environmental exposure.

Entities:  

Keywords:  Chemicals; Disease; Epigenetics; LncRNA; Smoking; Toxicology

Mesh:

Substances:

Year:  2016        PMID: 27234044      PMCID: PMC4967406          DOI: 10.1007/s40572-016-0092-1

Source DB:  PubMed          Journal:  Curr Environ Health Rep        ISSN: 2196-5412


  139 in total

1.  Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA.

Authors:  Katrin Panzitt; Marisa M O Tschernatsch; Christian Guelly; Tarek Moustafa; Martin Stradner; Heimo M Strohmaier; Charles R Buck; Helmut Denk; Renée Schroeder; Michael Trauner; Kurt Zatloukal
Journal:  Gastroenterology       Date:  2006-08-14       Impact factor: 22.682

2.  A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.

Authors:  Manuel Beltran; Isabel Puig; Cristina Peña; José Miguel García; Ana Belén Alvarez; Raúl Peña; Félix Bonilla; Antonio García de Herreros
Journal:  Genes Dev       Date:  2008-03-15       Impact factor: 11.361

3.  Disruption of a large intergenic noncoding RNA in subjects with neurodevelopmental disabilities.

Authors:  Michael E Talkowski; Gilles Maussion; Liam Crapper; Jill A Rosenfeld; Ian Blumenthal; Carrie Hanscom; Colby Chiang; Amelia Lindgren; Shahrin Pereira; Douglas Ruderfer; Alpha B Diallo; Juan Pablo Lopez; Gustavo Turecki; Elizabeth S Chen; Carolina Gigek; David J Harris; Va Lip; Yu An; Marta Biagioli; Marcy E Macdonald; Michael Lin; Stephen J Haggarty; Pamela Sklar; Shaun Purcell; Manolis Kellis; Stuart Schwartz; Lisa G Shaffer; Marvin R Natowicz; Yiping Shen; Cynthia C Morton; James F Gusella; Carl Ernst
Journal:  Am J Hum Genet       Date:  2012-12-07       Impact factor: 11.025

4.  PBMC and exosome-derived Hotair is a critical regulator and potent marker for rheumatoid arthritis.

Authors:  Jinsoo Song; Dongkyun Kim; Jiyeon Han; Yunha Kim; Myeungsu Lee; Eun-Jung Jin
Journal:  Clin Exp Med       Date:  2014-04-11       Impact factor: 3.984

5.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

6.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

7.  Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells.

Authors:  Rena Mizutani; Ai Wakamatsu; Noriyuki Tanaka; Hiroshi Yoshida; Naobumi Tochigi; Yoshio Suzuki; Tadahiro Oonishi; Hidenori Tani; Keiko Tano; Kenichi Ijiri; Takao Isogai; Nobuyoshi Akimitsu
Journal:  PLoS One       Date:  2012-04-19       Impact factor: 3.240

Review 8.  Impact of air pollution on allergic diseases.

Authors:  Hajime Takizawa
Journal:  Korean J Intern Med       Date:  2011-09-13       Impact factor: 2.884

9.  Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2.

Authors:  Oskar Marín-Béjar; Francesco P Marchese; Alejandro Athie; Yolanda Sánchez; Jovanna González; Victor Segura; Lulu Huang; Isabel Moreno; Alfons Navarro; Mariano Monzó; Jesús García-Foncillas; John L Rinn; Shuling Guo; Maite Huarte
Journal:  Genome Biol       Date:  2013       Impact factor: 13.583

10.  De novo loss- or gain-of-function mutations in KCNA2 cause epileptic encephalopathy.

Authors:  Steffen Syrbe; Ulrike B S Hedrich; Erik Riesch; Tania Djémié; Stephan Müller; Rikke S Møller; Bridget Maher; Laura Hernandez-Hernandez; Matthis Synofzik; Hande S Caglayan; Mutluay Arslan; José M Serratosa; Michael Nothnagel; Patrick May; Roland Krause; Heidrun Löffler; Katja Detert; Thomas Dorn; Heinrich Vogt; Günter Krämer; Ludger Schöls; Primus E Mullis; Tarja Linnankivi; Anna-Elina Lehesjoki; Katalin Sterbova; Dana C Craiu; Dorota Hoffman-Zacharska; Christian M Korff; Yvonne G Weber; Maja Steinlin; Sabina Gallati; Astrid Bertsche; Matthias K Bernhard; Andreas Merkenschlager; Wieland Kiess; Michael Gonzalez; Stephan Züchner; Aarno Palotie; Arvid Suls; Peter De Jonghe; Ingo Helbig; Saskia Biskup; Markus Wolff; Snezana Maljevic; Rebecca Schüle; Sanjay M Sisodiya; Sarah Weckhuysen; Holger Lerche; Johannes R Lemke
Journal:  Nat Genet       Date:  2015-03-09       Impact factor: 38.330

View more
  34 in total

1.  Genomic Tools for Environmental Epigenetics and Implications for Public Health.

Authors:  Bambarendage P U Perera; Laurie Svoboda; Dana C Dolinoy
Journal:  Curr Opin Toxicol       Date:  2019-03-08

2.  Prenatal Bisphenol A Exposure in Mice Induces Multitissue Multiomics Disruptions Linking to Cardiometabolic Disorders.

Authors:  Le Shu; Qingying Meng; Graciel Diamante; Brandon Tsai; Yen-Wei Chen; Andrew Mikhail; Helen Luk; Beate Ritz; Patrick Allard; Xia Yang
Journal:  Endocrinology       Date:  2019-02-01       Impact factor: 4.736

Review 3.  The role of environmental exposures and the epigenome in health and disease.

Authors:  Bambarendage P U Perera; Christopher Faulk; Laurie K Svoboda; Jaclyn M Goodrich; Dana C Dolinoy
Journal:  Environ Mol Mutagen       Date:  2019-06-20       Impact factor: 3.216

4.  Evaluation of Post-Mortem Effects on Global Brain DNA Methylation and Hydroxymethylation.

Authors:  Louise K Sjöholm; Yusuf Ransome; Tomas J Ekström; Oskar Karlsson
Journal:  Basic Clin Pharmacol Toxicol       Date:  2017-11-13       Impact factor: 4.080

Review 5.  Long Non-Coding RNAs: A Novel Paradigm for Toxicology.

Authors:  Joseph L Dempsey; Julia Yue Cui
Journal:  Toxicol Sci       Date:  2016-11-17       Impact factor: 4.849

6.  Regulation of cytochrome P450 expression by microRNAs and long noncoding RNAs: Epigenetic mechanisms in environmental toxicology and carcinogenesis.

Authors:  Dongying Li; William H Tolleson; Dianke Yu; Si Chen; Lei Guo; Wenming Xiao; Weida Tong; Baitang Ning
Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev       Date:  2019-07-15       Impact factor: 3.781

Review 7.  Epigenetic reprogramming in metabolic disorders: nutritional factors and beyond.

Authors:  Zhiyong Cheng; Louise Zheng; Fabio A Almeida
Journal:  J Nutr Biochem       Date:  2017-10-23       Impact factor: 6.048

8.  Placental lncRNA Expression Is Associated With Prenatal Phthalate Exposure.

Authors:  Ronit Machtinger; Jia Zhong; Abdallah Mansur; Michal Adir; Catherine Racowsky; Russ Hauser; Kasey Brennan; Oskar Karlsson; Andrea A Baccarelli
Journal:  Toxicol Sci       Date:  2018-05-01       Impact factor: 4.849

9.  Bisphenol A and Phthalates Modulate Peritoneal Macrophage Function in Female Mice Involving SYMD2-H3K36 Dimethylation.

Authors:  Quanxi Li; Catherine R Lawrence; Romana A Nowak; Jodi A Flaws; Milan K Bagchi; Indrani C Bagchi
Journal:  Endocrinology       Date:  2018-05-01       Impact factor: 4.736

10.  The human exposome and health in the Anthropocene.

Authors:  Oskar Karlsson; Joacim Rocklöv; Alizée P Lehoux; Jonas Bergquist; Anna Rutgersson; Martin J Blunt; Linda S Birnbaum
Journal:  Int J Epidemiol       Date:  2021-05-17       Impact factor: 7.196

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.