Literature DB >> 27232645

Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli.

Daniele De Martino1, Fabrizio Capuani, Andrea De Martino.   

Abstract

The solution space of genome-scale models of cellular metabolism provides a map between physically viable flux configurations and cellular metabolic phenotypes described, at the most basic level, by the corresponding growth rates. By sampling the solution space of E. coli's metabolic network, we show that empirical growth rate distributions recently obtained in experiments at single-cell resolution can be explained in terms of a trade-off between the higher fitness of fast-growing phenotypes and the higher entropy of slow-growing ones. Based on this, we propose a minimal model for the evolution of a large bacterial population that captures this trade-off. The scaling relationships observed in experiments encode, in such frameworks, for the same distance from the maximum achievable growth rate, the same degree of growth rate maximization, and/or the same rate of phenotypic change. Being grounded on genome-scale metabolic network reconstructions, these results allow for multiple implications and extensions in spite of the underlying conceptual simplicity.

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Year:  2016        PMID: 27232645     DOI: 10.1088/1478-3975/13/3/036005

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  10 in total

1.  Initial cell density encodes proliferative potential in cancer cell populations.

Authors:  Chiara Enrico Bena; Marco Del Giudice; Alice Grob; Thomas Gueudré; Mattia Miotto; Dimitra Gialama; Matteo Osella; Emilia Turco; Francesca Ceroni; Andrea De Martino; Carla Bosia
Journal:  Sci Rep       Date:  2021-03-17       Impact factor: 4.379

2.  Relationship between fitness and heterogeneity in exponentially growing microbial populations.

Authors:  Anna Paola Muntoni; Alfredo Braunstein; Andrea Pagnani; Daniele De Martino; Andrea De Martino
Journal:  Biophys J       Date:  2022-04-14       Impact factor: 3.699

3.  An analytic approximation of the feasible space of metabolic networks.

Authors:  Alfredo Braunstein; Anna Paola Muntoni; Andrea Pagnani
Journal:  Nat Commun       Date:  2017-04-06       Impact factor: 14.919

4.  Statistical mechanics for metabolic networks during steady state growth.

Authors:  Daniele De Martino; Anna Mc Andersson; Tobias Bergmiller; Călin C Guet; Gašper Tkačik
Journal:  Nat Commun       Date:  2018-07-30       Impact factor: 14.919

5.  Metabolic flux configuration determination using information entropy.

Authors:  Marcelo Rivas-Astroza; Raúl Conejeros
Journal:  PLoS One       Date:  2020-12-04       Impact factor: 3.240

6.  Microbial single-cell growth response at defined carbon limiting conditions.

Authors:  Dorina Lindemann; Christoph Westerwalbesloh; Dietrich Kohlheyer; Alexander Grünberger; Eric von Lieres
Journal:  RSC Adv       Date:  2019-05-07       Impact factor: 4.036

Review 7.  An introduction to the maximum entropy approach and its application to inference problems in biology.

Authors:  Andrea De Martino; Daniele De Martino
Journal:  Heliyon       Date:  2018-04-13

8.  A Metagenomic Analysis of Bacterial Microbiota in the Digestive Tract of Triatomines.

Authors:  Nicolas Carels; Marcial Gumiel; Fabio Faria da Mota; Carlos José de Carvalho Moreira; Patricia Azambuja
Journal:  Bioinform Biol Insights       Date:  2017-09-27

9.  The Empirical Fluctuation Pattern of E. coli Division Control.

Authors:  Jacopo Grilli; Clotilde Cadart; Gabriele Micali; Matteo Osella; Marco Cosentino Lagomarsino
Journal:  Front Microbiol       Date:  2018-07-30       Impact factor: 5.640

10.  Phenotypic Plasticity of Staphylococcus aureus in Liquid Medium Containing Vancomycin.

Authors:  Mengdi Rong; Xuyang Zheng; Meixia Ye; Jun Bai; Xiangming Xie; Yi Jin; Xiaoqing He
Journal:  Front Microbiol       Date:  2019-04-16       Impact factor: 5.640

  10 in total

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