Literature DB >> 27232455

Non-linear longitudinal compression effect on dynamics of the transcription bubble in DNA.

E S Shikhovtseva1, V N Nazarov2.   

Abstract

The dependence of the dynamics of transcription bubble on the parameters of non-linear longitudinal compression is presented on the base of simple model of soliton-like conformational switchings in two-component bistable polymer molecules with energetically non-equivalent stable states. It has been shown that under certain conditions the longitudinal compression may be a trap for a conformational switching.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DNA; Longitudinal compression; Perturbed sine-Gordon equation; Soliton; Transcription bubble

Mesh:

Substances:

Year:  2016        PMID: 27232455     DOI: 10.1016/j.bpc.2016.05.005

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  3 in total

1.  Multireflection propagation of conformational kinks in a two-component model of DNA as the transfer mode of the transcriptional replication fork.

Authors:  E S Shikhovtseva; V N Nazarov
Journal:  Eur Biophys J       Date:  2017-06-15       Impact factor: 1.733

2.  First-principles calculations of Raman vibrational modes in the fingerprint region for connective tissue.

Authors:  E T Sato; H Martinho
Journal:  Biomed Opt Express       Date:  2018-03-15       Impact factor: 3.732

Review 3.  Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state dynamics.

Authors:  Ludmila V Yakushevich; Larisa A Krasnobaeva
Journal:  Biophys Rev       Date:  2021-05-13
  3 in total

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