Literature DB >> 27230689

DATEL: A Scarless and Sequence-Independent DNA Assembly Method Using Thermostable Exonucleases and Ligase.

Peng Jin1, Wenwen Ding1, Guocheng Du1, Jian Chen1, Zhen Kang1.   

Abstract

DNA assembly is a pivotal technique in synthetic biology. Here, we report a scarless and sequence-independent DNA assembly method using thermal exonucleases (Taq and Pfu DNA polymerases) and Taq DNA ligase (DATEL). Under the optimized conditions, DATEL allows rapid assembly of 2-10 DNA fragments (1-2 h) with high accuracy (between 74 and 100%). Owing to the simple operation system with denaturation-annealing-cleavage-ligation temperature cycles in one tube, DATEL is expected to be a desirable choice for both manual and automated high-throughput assembly of DNA fragments, which will greatly facilitate the rapid progress of synthetic biology and metabolic engineering.

Keywords:  DNA assembly; metabolic engineering; synthetic biology; thermostable exonuclease and ligase

Mesh:

Substances:

Year:  2016        PMID: 27230689     DOI: 10.1021/acssynbio.6b00078

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  7 in total

Review 1.  Recent advances of molecular toolbox construction expand Pichia pastoris in synthetic biology applications.

Authors:  Zhen Kang; Hao Huang; Yunfeng Zhang; Guocheng Du; Jian Chen
Journal:  World J Microbiol Biotechnol       Date:  2016-11-30       Impact factor: 3.312

2.  Scarless assembly of unphosphorylated DNA fragments with a simplified DATEL method.

Authors:  Wenwen Ding; Huanjiao Weng; Peng Jin; Guocheng Du; Jian Chen; Zhen Kang
Journal:  Bioengineered       Date:  2017-05-04       Impact factor: 3.269

3.  AFEAP cloning: a precise and efficient method for large DNA sequence assembly.

Authors:  Fanli Zeng; Jinping Zang; Suhua Zhang; Zhimin Hao; Jingao Dong; Yibin Lin
Journal:  BMC Biotechnol       Date:  2017-11-14       Impact factor: 2.563

4.  Seamless assembly of DNA parts into functional devices and higher order multi-device systems.

Authors:  Jeffrey Carl Braman; Peter J Sheffield
Journal:  PLoS One       Date:  2019-06-28       Impact factor: 3.240

5.  T5 exonuclease-dependent assembly offers a low-cost method for efficient cloning and site-directed mutagenesis.

Authors:  Yongzhen Xia; Kai Li; Jingjing Li; Tianqi Wang; Lichuan Gu; Luying Xun
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

6.  A seamless and iterative DNA assembly method named PS-Brick and its assisted metabolic engineering for threonine and 1-propanol production.

Authors:  Shuwen Liu; Haihan Xiao; Fangfang Zhang; Zheng Lu; Yun Zhang; Aihua Deng; Zhongcai Li; Cui Yang; Tingyi Wen
Journal:  Biotechnol Biofuels       Date:  2019-07-15       Impact factor: 6.040

Review 7.  Recent Advances in Strategies for the Cloning of Natural Product Biosynthetic Gene Clusters.

Authors:  Wenfang Wang; Guosong Zheng; Yinhua Lu
Journal:  Front Bioeng Biotechnol       Date:  2021-07-13
  7 in total

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