Literature DB >> 27230540

ssDNA and the Argonautes: The Quest for the Next Golden Editor.

Gabriel Martínez-Gálvez1, Hirotaka Ata2, Jarryd M Campbell2, Stephen C Ekker2.   

Abstract

Genome engineering has gone mainstream because of breakthroughs in defining and harnessing naturally occurring, customizable DNA recognition cursors (protein or RNA-guided). At present, most gene editing relies on these cursors to direct custom DNA endonucleases to a specific genomic sequence to induce a double-strand break. New tools for genome engineering are continuously being explored, and another advance in DNA targeting has recently been described. Argonaute isolated from Natronobacterium gregoryi (NgAgo) is an ssDNA-based cursor that thus far has no known limitations in sequence recognition, shows promise for high specificity, and for many applications may represent a potentially more accessible genome-editing system over prior tools as it requires only a single, 24-base, 5' phosphorylated ssDNA for DNA targeting. Genome engineering is in a remarkable moment of unprecedented growth with exponential reduction in costs reminiscent of Moore's law in electronics. Many questions remain with regard to Argonaute utility in specific systems, but there is no doubt that genome engineering is expanding into new and exciting areas from synthetic biology to gene therapy.

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Year:  2016        PMID: 27230540      PMCID: PMC4931338          DOI: 10.1089/hum.2016.071

Source DB:  PubMed          Journal:  Hum Gene Ther        ISSN: 1043-0342            Impact factor:   5.695


  12 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

3.  DNA-guided genome editing using the Natronobacterium gregoryi Argonaute.

Authors:  Feng Gao; Xiao Z Shen; Feng Jiang; Yongqiang Wu; Chunyu Han
Journal:  Nat Biotechnol       Date:  2016-05-02       Impact factor: 54.908

Review 4.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

5.  DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases.

Authors:  Tatjana I Cornu; Stacey Thibodeau-Beganny; Eva Guhl; Stephen Alwin; Magdalena Eichtinger; J Keith Joung; J K Joung; Toni Cathomen
Journal:  Mol Ther       Date:  2007-11-20       Impact factor: 11.454

Review 6.  Programmable Site-Specific Nucleases for Targeted Genome Engineering in Higher Eukaryotes.

Authors:  Ganesan Govindan; Sivaprakash Ramalingam
Journal:  J Cell Physiol       Date:  2016-03-15       Impact factor: 6.384

Review 7.  The evolutionary journey of Argonaute proteins.

Authors:  Daan C Swarts; Kira Makarova; Yanli Wang; Kotaro Nakanishi; René F Ketting; Eugene V Koonin; Dinshaw J Patel; John van der Oost
Journal:  Nat Struct Mol Biol       Date:  2014-09       Impact factor: 15.369

8.  Short motif sequences determine the targets of the prokaryotic CRISPR defence system.

Authors:  F J M Mojica; C Díez-Villaseñor; J García-Martínez; C Almendros
Journal:  Microbiology       Date:  2009-03       Impact factor: 2.777

9.  Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA.

Authors:  Daan C Swarts; Jorrit W Hegge; Ismael Hinojo; Masami Shiimori; Michael A Ellis; Justin Dumrongkulraksa; Rebecca M Terns; Michael P Terns; John van der Oost
Journal:  Nucleic Acids Res       Date:  2015-04-29       Impact factor: 16.971

Review 10.  Making designer mutants in model organisms.

Authors:  Ying Peng; Karl J Clark; Jarryd M Campbell; Magdalena R Panetta; Yi Guo; Stephen C Ekker
Journal:  Development       Date:  2014-11       Impact factor: 6.868

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  2 in total

1.  No evidence for genome editing in mouse zygotes and HEK293T human cell line using the DNA-guided Natronobacterium gregoryi Argonaute (NgAgo).

Authors:  Nay Chi Khin; Jenna L Lowe; Lora M Jensen; Gaetan Burgio
Journal:  PLoS One       Date:  2017-06-13       Impact factor: 3.240

Review 2.  Genome-Editing Technologies: Concept, Pros, and Cons of Various Genome-Editing Techniques and Bioethical Concerns for Clinical Application.

Authors:  Sikandar Hayat Khan
Journal:  Mol Ther Nucleic Acids       Date:  2019-04-03
  2 in total

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