Literature DB >> 27228397

On Tree-Based Phylogenetic Networks.

Louxin Zhang1.   

Abstract

A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree-based networks. We present a simple necessary and sufficient condition for tree-based networks and prove that a universal tree-based network exists for any number of taxa that contains as its base every phylogenetic tree on the same set of taxa. This answers two problems posted by Francis and Steel recently. A byproduct is a computer program for generating random binary phylogenetic networks under the uniform distribution model.

Keywords:  horizontal gene transfer; phylogenetic tree; reticulation visibility; tree-base network

Mesh:

Year:  2016        PMID: 27228397     DOI: 10.1089/cmb.2015.0228

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  5 in total

1.  Tree-based networks: characterisations, metrics, and support trees.

Authors:  Joan Carles Pons; Charles Semple; Mike Steel
Journal:  J Math Biol       Date:  2018-10-03       Impact factor: 2.259

2.  In the light of deep coalescence: revisiting trees within networks.

Authors:  Jiafan Zhu; Yun Yu; Luay Nakhleh
Journal:  BMC Bioinformatics       Date:  2016-11-11       Impact factor: 3.169

3.  Tree-Based Unrooted Phylogenetic Networks.

Authors:  A Francis; K T Huber; V Moulton
Journal:  Bull Math Biol       Date:  2017-12-13       Impact factor: 1.758

4.  A program to compute the soft Robinson-Foulds distance between phylogenetic networks.

Authors:  Bingxin Lu; Louxin Zhang; Hon Wai Leong
Journal:  BMC Genomics       Date:  2017-03-14       Impact factor: 3.969

5.  Generating normal networks via leaf insertion and nearest neighbor interchange.

Authors:  Louxin Zhang
Journal:  BMC Bioinformatics       Date:  2019-12-17       Impact factor: 3.169

  5 in total

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