Literature DB >> 27224741

Rare variants, autoimmune disease, and arthritis.

Sharon A Chung1, Anthony K Shum.   

Abstract

PURPOSE OF REVIEW: We review select studies of newly discovered rare variants in autoimmune diseases with a focus on newly described monogenic disorders, rheumatoid arthritis, and systemic lupus erythematosus. RECENT
FINDINGS: Two new monogenic syndromes of inflammatory arthritis were discovered using whole exome sequencing: the coatomer subunit alpha syndrome because of rare mutations in coatomer subunit alpha and haploinsufficiency of A20 resulting from rare mutations in TNFAIP3. Targeted exon sequencing identified rare variants in IL2RA and IL2RB associated with rheumatoid arthritis. Rare variants in TREX1 and other genes associated with monogenic interferonopathies are also associated with systemic lupus erythematosus.
SUMMARY: Rare genetic variants contribute to the heritability of autoimmunity and provide key insight into both novel and previously implicated immunological pathways that are disrupted in autoimmune diseases.

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Year:  2016        PMID: 27224741      PMCID: PMC4910637          DOI: 10.1097/BOR.0000000000000298

Source DB:  PubMed          Journal:  Curr Opin Rheumatol        ISSN: 1040-8711            Impact factor:   5.006


  48 in total

1.  Evaluation of the TREX1 gene in a large multi-ancestral lupus cohort.

Authors:  B Namjou; P H Kothari; J A Kelly; S B Glenn; J O Ojwang; A Adler; M E Alarcón-Riquelme; C J Gallant; S A Boackle; L A Criswell; R P Kimberly; E Brown; J Edberg; A M Stevens; C O Jacob; B P Tsao; G S Gilkeson; D L Kamen; J T Merrill; M Petri; R R Goldman; L M Vila; J-M Anaya; T B Niewold; J Martin; B A Pons-Estel; J M Sabio; J L Callejas; T J Vyse; S-C Bae; F W Perrino; B I Freedman; R H Scofield; K L Moser; P M Gaffney; J A James; C D Langefeld; K M Kaufman; J B Harley; J P Atkinson
Journal:  Genes Immun       Date:  2011-01-27       Impact factor: 2.676

Review 2.  The genomics of autoimmune disease in the era of genome-wide association studies and beyond.

Authors:  Christopher J Lessard; John A Ice; Indra Adrianto; Graham B Wiley; Jennifer A Kelly; Patrick M Gaffney; Courtney G Montgomery; Kathy L Moser
Journal:  Autoimmun Rev       Date:  2011-10-07       Impact factor: 9.754

Review 3.  COPI budding within the Golgi stack.

Authors:  Vincent Popoff; Frank Adolf; Britta Brügger; Felix Wieland
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-11-01       Impact factor: 10.005

4.  A genome-wide association study identifies two new risk loci for Graves' disease.

Authors:  Xun Chu; Chun-Ming Pan; Shuang-Xia Zhao; Jun Liang; Guan-Qi Gao; Xiao-Mei Zhang; Guo-Yue Yuan; Chang-Gui Li; Li-Qiong Xue; Min Shen; Wei Liu; Fang Xie; Shao-Ying Yang; Hai-Feng Wang; Jing-Yi Shi; Wei-Wei Sun; Wen-Hua Du; Chun-Lin Zuo; Jin-Xiu Shi; Bing-Li Liu; Cui-Cui Guo; Ming Zhan; Zhao-Hui Gu; Xiao-Na Zhang; Fei Sun; Zhi-Quan Wang; Zhi-Yi Song; Cai-Yan Zou; Wei-Hua Sun; Ting Guo; Huang-Ming Cao; Jun-Hua Ma; Bing Han; Ping Li; He Jiang; Qiu-Hua Huang; Liming Liang; Li-Bin Liu; Gang Chen; Qing Su; Yong-De Peng; Jia-Jun Zhao; Guang Ning; Zhu Chen; Jia-Lun Chen; Sai-Juan Chen; Wei Huang; Huai-Dong Song
Journal:  Nat Genet       Date:  2011-08-14       Impact factor: 38.330

Review 5.  Clinical presentation of human C1q deficiency: How much of a lupus?

Authors:  Mihaela Stegert; Merete Bock; Marten Trendelenburg
Journal:  Mol Immunol       Date:  2015-04-03       Impact factor: 4.407

6.  Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus.

Authors:  Emily C Baechler; Franak M Batliwalla; George Karypis; Patrick M Gaffney; Ward A Ortmann; Karl J Espe; Katherine B Shark; William J Grande; Karis M Hughes; Vivek Kapur; Peter K Gregersen; Timothy W Behrens
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

7.  Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

Authors:  Geoffrey Hom; Robert R Graham; Barmak Modrek; Kimberly E Taylor; Ward Ortmann; Sophie Garnier; Annette T Lee; Sharon A Chung; Ricardo C Ferreira; P V Krishna Pant; Dennis G Ballinger; Roman Kosoy; F Yesim Demirci; M Ilyas Kamboh; Amy H Kao; Chao Tian; Iva Gunnarsson; Anders A Bengtsson; Solbritt Rantapää-Dahlqvist; Michelle Petri; Susan Manzi; Michael F Seldin; Lars Rönnblom; Ann-Christine Syvänen; Lindsey A Criswell; Peter K Gregersen; Timothy W Behrens
Journal:  N Engl J Med       Date:  2008-01-20       Impact factor: 91.245

Review 8.  Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies.

Authors:  Isaac T W Harley; Kenneth M Kaufman; Carl D Langefeld; John B Harley; Jennifer A Kelly
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

Review 9.  Disease mechanisms in rheumatology--tools and pathways: defining functional genetic variants in autoimmune diseases.

Authors:  Shaofeng Wang; Graham B Wiley; Jennifer A Kelly; Patrick M Gaffney
Journal:  Arthritis Rheumatol       Date:  2015-01       Impact factor: 10.995

10.  The UK10K project identifies rare variants in health and disease.

Authors:  Klaudia Walter; Josine L Min; Jie Huang; Lucy Crooks; Yasin Memari; Shane McCarthy; John R B Perry; ChangJiang Xu; Marta Futema; Daniel Lawson; Valentina Iotchkova; Stephan Schiffels; Audrey E Hendricks; Petr Danecek; Rui Li; James Floyd; Louise V Wain; Inês Barroso; Steve E Humphries; Matthew E Hurles; Eleftheria Zeggini; Jeffrey C Barrett; Vincent Plagnol; J Brent Richards; Celia M T Greenwood; Nicholas J Timpson; Richard Durbin; Nicole Soranzo
Journal:  Nature       Date:  2015-09-14       Impact factor: 49.962

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  5 in total

1.  Clinical characteristics and genetic analysis of A20 haploinsufficiency.

Authors:  Dan Zhang; Gaixiu Su; Zhixuan Zhou; Jianming Lai
Journal:  Pediatr Rheumatol Online J       Date:  2021-05-24       Impact factor: 3.054

2.  Identification of New, Functionally Relevant Mutations in the Coding Regions of the Human Fos and Jun Proto-Oncogenes in Rheumatoid Arthritis Synovial Tissue.

Authors:  René Huber; Sandra Augsten; Holger Kirsten; Roland Zell; Axel Stelzner; Hansjörg Thude; Thorsten Eidner; Bruno Stuhlmüller; Peter Ahnert; Raimund W Kinne
Journal:  Life (Basel)       Date:  2020-12-23

3.  Upregulated Expression of IL2RB Causes Disorder of Immune Microenvironment in Patients with Kawasaki Disease.

Authors:  Yunfei Liao; Ben Ke; Xiaoyan Long; Jianjun Xu; Yongbing Wu
Journal:  Biomed Res Int       Date:  2022-07-25       Impact factor: 3.246

4.  Characteristics and genetic analysis of patients suspected with early-onset systemic lupus erythematosus.

Authors:  Wan-Fang Lee; Wen-Lang Fan; Jing-Long Huang; Chao-Yi Wu; Min-Hua Tseng; Huang-Yu Yang
Journal:  Pediatr Rheumatol Online J       Date:  2022-08-13       Impact factor: 3.413

Review 5.  Monogenic lupus due to spondyloenchondrodysplasia with spastic paraparesis and intracranial calcification: case-based review.

Authors:  Bulent Kara; Zelal Ekinci; Sezgin Sahin; Mesut Gungor; Ayfer Sakarya Gunes; Kubra Ozturk; Amra Adrovic; Ayse Cefle; Murat Inanç; Ahmet Gul; Ozgur Kasapcopur
Journal:  Rheumatol Int       Date:  2020-07-20       Impact factor: 2.631

  5 in total

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