Literature DB >> 27217561

Spliceosomal intronogenesis.

Sujin Lee1, Scott W Stevens2.   

Abstract

The presence of intervening sequences, termed introns, is a defining characteristic of eukaryotic nuclear genomes. Once transcribed into pre-mRNA, these introns must be removed within the spliceosome before export of the processed mRNA to the cytoplasm, where it is translated into protein. Although intron loss has been demonstrated experimentally, several mysteries remain regarding the origin and propagation of introns. Indeed, documented evidence of gain of an intron has only been suggested by phylogenetic analyses. We report the use of a strategy that detects selected intron gain and loss events. We have experimentally verified, to our knowledge, the first demonstrations of intron transposition in any organism. From our screen, we detected two separate intron gain events characterized by the perfect transposition of a reporter intron into the yeast genes RPL8B and ADH2, respectively. We show that the newly acquired introns are able to be removed from their respective pre-mRNAs by the spliceosome. Additionally, the novel allele, RPL8Bint, is functional when overexpressed within the genome in a strain lacking the Rpl8 paralogue RPL8A, demonstrating that the gene targeted for intronogenesis is functional.

Entities:  

Keywords:  evolution; intron; spliceosome

Mesh:

Substances:

Year:  2016        PMID: 27217561      PMCID: PMC4988565          DOI: 10.1073/pnas.1605113113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

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Authors:  T R Cech
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

2.  Both catalytic steps of nuclear pre-mRNA splicing are reversible.

Authors:  Chi-Kang Tseng; Soo-Chen Cheng
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

Review 3.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

4.  Pseudogenes in yeast?

Authors:  G R Fink
Journal:  Cell       Date:  1987-04-10       Impact factor: 41.582

5.  The involvement of cellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae.

Authors:  L K Derr
Journal:  Genetics       Date:  1998-03       Impact factor: 4.562

6.  Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae.

Authors:  M Spingola; L Grate; D Haussler; M Ares
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

7.  Size and position of intervening sequences are critical for the splicing efficiency of pre-mRNA in the yeast Saccharomyces cerevisiae.

Authors:  F J Klinz; D Gallwitz
Journal:  Nucleic Acids Res       Date:  1985-06-11       Impact factor: 16.971

8.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

9.  Rapid identification of mRNA processing defects with a novel single-cell yeast reporter.

Authors:  Matthew R Sorenson; Scott W Stevens
Journal:  RNA       Date:  2014-03-26       Impact factor: 4.942

Review 10.  Identifying the mechanisms of intron gain: progress and trends.

Authors:  Paul Yenerall; Leming Zhou
Journal:  Biol Direct       Date:  2012-09-10       Impact factor: 4.540

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  4 in total

1.  Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA.

Authors:  Daniel B Haack; Xiaodong Yan; Cheng Zhang; Jason Hingey; Dmitry Lyumkis; Timothy S Baker; Navtej Toor
Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

2.  Microsporidian Introns Retained against a Background of Genome Reduction: Characterization of an Unusual Set of Introns.

Authors:  Thomas A Whelan; Nicole T Lee; Renny C H Lee; Naomi M Fast
Journal:  Genome Biol Evol       Date:  2019-01-01       Impact factor: 3.416

3.  Evolution of intron splicing towards optimized gene expression is based on various Cis- and Trans-molecular mechanisms.

Authors:  Idan Frumkin; Ido Yofe; Raz Bar-Ziv; Yonat Gurvich; Yen-Yun Lu; Yoav Voichek; Ruth Towers; Dvir Schirman; Heike Krebber; Yitzhak Pilpel
Journal:  PLoS Biol       Date:  2019-08-23       Impact factor: 8.029

4.  Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome.

Authors:  Jason Talkish; Haller Igel; Rhonda J Perriman; Lily Shiue; Sol Katzman; Elizabeth M Munding; Robert Shelansky; John Paul Donohue; Manuel Ares
Journal:  PLoS Genet       Date:  2019-08-22       Impact factor: 5.917

  4 in total

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