| Literature DB >> 27215701 |
Nathalie Van Acker1,2, Michael Ragé3, Ellen Sluydts4, Michiel W M Knaapen4, Martine De Bie4, Maarten Timmers5,6, Erik Fransen7, Carla Duymelinck4, Stefanie De Schepper4, Praveen Anand8, Theo Meert5, Léon Plaghki3, Patrick Cras9.
Abstract
BACKGROUND: In this study we explored the possibility of automating the PGP9.5 immunofluorescence staining assay for the diagnosis of small fiber neuropathy using skin punch biopsies. The laboratory developed test (LDT) was subjected to a validation strategy as required by good laboratory practice guidelines and compared to the well-established gold standard method approved by the European Federation of Neurological Societies (EFNS). To facilitate automation, the use of thinner sections. (16 µm) was evaluated. Biopsies from previously published studies were used. The aim was to evaluate the diagnostic performance of the LDT compared to the gold standard. We focused on technical aspects to reach high-quality standardization of the PGP9.5 assay and finally evaluate its potential for use in large scale batch testing.Entities:
Keywords: Clinical; Diagnostic; Immunofluorescence; Skin biopsy; Small fiber neuropathy
Mesh:
Substances:
Year: 2016 PMID: 27215701 PMCID: PMC4878004 DOI: 10.1186/s13104-016-2085-4
Source DB: PubMed Journal: BMC Res Notes ISSN: 1756-0500
Fig. 1Counting rules according to the GS-EFNS (1) and LDT (2). Modifications to the gold standard counting rule for intra epidermal nerve fibers (IENF) are depicted to include IENF fragments (_F) detected as single fibers (_Si) or branching (_Br). Red PGP9.5, blue Hoechst, dashed line dermal-epidermal junction. 1 IENF; 1A IENF_Si; 1B IENF_Br; 2 IENF_F; 2A IENF_FSi; 2B IENF_FBr. (Scale bar 20 µm)
Fig. 2Evaluation of antibody accuracy. a Western Blot analysis of A549 and U87 cell lines using the rabbit polyclonal anti-human PGP9.5 antibody (green). b Immunofluorescent staining of PGP9.5 (red) and ß-III-Tubulin (green) in the epidermis of a human skin biopsy, blue Hoechst. Asterisk Nerve fiber; Arrow head Langerhans-cells. (Scale bar 20 µm)
Comparing GS-EFNS and LDT for assessing nerve fiber density in skin biopsies of healthy volunteers
| GS-EFNS | LDT | Mean diff | P | |
|---|---|---|---|---|
|
| 11.47 ± 2.67 | 5.65 ± 1.93 | 5.8 | <0.001 |
| IENF_Si (#/mm) | 4.45 ± 1.06 | 4.31 ± 1.59 | 0.1 | 0.95 |
| IENF_Br (#/mm) | 7.02 ± 2.23 | 1.34 ± 0.51 | 5.7 | <0.001 |
| Sec branching (#/IENF_Br) | 3.17 ± 0.26 | 2.39 ± 0.40 | <0.001 | |
| Sec branching (#/mm) | 22.04 ± 7.92 | 3.56 ± 1.44 | 18.5 | <0.001 |
|
| 3.98 ± 2.25 | 6.77 ± 2.89 | −2.8 | 0.01 |
| IENF_FSi (#/mm) | 2.36 ± 1.10 | 4.86 ± 2.18 | −2.5 | 0.002 |
| IENF_FBr (#/mm) | 1.62 ± 1.28 | 1.91 ± 0.86 | −0.3 | 0.36 |
| Sec branching (#/IENF_FBr) | 2.52 ± 0.57 | 2.13 ± 0.23 | 0.04 | |
| Sec branching (#/mm) | 4.42 ± 3.91 | 4.26 ± 1.88 | 0.01 | |
|
| 15.45 ± 4.43 | 12.45 ± 4.33 | 3.0 | 0.24 |
ENF epidermal nerve fiber, GS-EFNS gold standard method according to EFNS; IENF intra-epidermal nerve fiber, IENF_Si intra-epidermal nerve fiber crossing dermal-epidermal junction as single fiber, IENF_Br intra-epidermal nerve fiber crossing dermal-epidermal junction as fiber showing branching, IENF_F nerve fiber fragment lying free in epidermis, IENF_FSi nerve fiber fragment lying free in epidermis as single fragment, IENF_FBr nerve fiber fragment lying free in epidermis showing branching, LDT laboratory developed test, Sec secondary
Fig. 3PGP9.5 Immunofluorescence in skin biopsy of a healthy volunteer. PGP9.5 immunofluorescence using the gold standard (GS-EFNS: a1) method and laboratory developed test (LDT: b1) was performed as described. a2 and b2 show the single channel image of PGP9.5 immunofluorescence (red). Red PGP9.5, Blue Hoechst. (Scale bar 50 µm)
Comparing GS-EFNS and LDT for assessing nerve fiber density in skin biopsies of SFN patients
| GS-EFNS | LDT | Mean diff. | P | |
|---|---|---|---|---|
|
| 1.12 ± 1.65 | 0.89 ± 1.35 | 0.23 | 0.42 |
| IENF_Si | 0.55 ± 0.56 | 0.71 ± 0.95 | −0.16 | 0.42 |
| IENF_Br | 0.57 ± 1.16 | 0.18 ± 0.43 | 0.39 | 0.09 |
|
| 0.38 ± 0.84 | 0.66 ± 1.16 | −0.29 | 0.25 |
| IENF_FSi | 0.23 ± 0.49 | 0.46 ± 0.76 | −0.23 | 0.30 |
| IENF_FBr | 0.15 ± 0.35 | 0.21 ± 0.41 | −0.06 | 0.17 |
|
| 1.50 ± 2.46 | 1.56 ± 2.48 | −0.06 | 0.42 |
Diff difference, ENF epidermal nerve fiber, GS-EFNS gold standard method according to EFNS, IENF intra-epidermal nerve fiber, IENF_Si intra-epidermal nerve fiber crossing dermal-epidermal junction as single fiber, IENF_Br intra-epidermal nerve fiber crossing dermal-epidermal junction as fiber showing branching, IENF_F nerve fiber fragment lying free in epidermis, IENF_FSi nerve fiber fragment lying free in epidermis as single fragment, IENF_FBr nerve fiber fragment lying free in epidermis showing branching, LDT laboratory developed test
Fig. 4PGP9.5 Immunofluorescence in skin biopsy of a SFN patient. PGP9.5 immunofluorescence using the gold standard (GS-EFNS: a) and laboratory developed test (LDT: b) was performed as described. Red PGP9.5, Blue Hoechst. (Scale bar 50 µm)
Fig. 5Diagnostic performance of the LDT for SFN. a Multiple comparisons graphic, retrieved after one-way analysis of variance (ANOVA) of IENF data obtained using gold standard staining (GS-EFNS) of skin biopsies from healthy volunteers and SFN patients (*** p < 0.001). b Diagnostic performance of LDT for variable Total ENF/mm: area under the ROC curve of 0.72 and p = 0.031 with a sensitivity of 80 % and specificity of 64 %. The lower average Total ENF linear density value in the tested control group, 11.02 Total ENF/mm, was used as cut-off
Assessment of the inter-slide stability for scoring PGP9.5 using Bland–Altman analysis for the comparison of GS-EFNS and LDT
| Mean diff (#/mm) | |
|---|---|
|
| |
| M1–M2 | |
| IENF_Si | −0.3 |
| IENF_Br | −0.3 |
| IENF_FSi | 0.2 |
| IENF_FBr | 0.4 |
| IENF_Si | −0.3 |
| M1–M3 | |
| IENF_Si | 0.2 |
| IENF_Br | 0.5 |
| IENF_FSi | 0.5 |
| IENF_FBr | 0.2 |
|
| |
| M1–M2 | |
| IENF_Si | −0.9 |
| IENF_Br | 0 |
| IENF_FSi | −0.3 |
| IENF_FBr | −0.2 |
| M1–M3 | |
| IENF_Si | −0.8 |
| IENF_Br | 0.5 |
| IENF_FSi | −0.6 |
| IENF_FBr | 0.2 |
Diff difference, ENF epidermal nerve fiber, GS-EFNS gold standard method according to EFNS, IENF intra-epidermal nerve fiber, IENF_Si intra-epidermal nerve fiber crossing dermal-epidermal junction as single fiber, IENF_Br intra-epidermal nerve fiber crossing dermal-epidermal junction as fiber showing branching, IENF_F nerve fiber fragment lying free in epidermis, IENF_FSi nerve fiber fragment lying free in epidermis as single fragment, IENF_FBr nerve fiber fragment lying free in epidermis showing branching, LDT laboratory developed test
Inter-observer agreement when determining nerve fiber density in skin biopsies of SFN patients using LDT
| ICC | |
|---|---|
|
| 0.97 |
| IENF_Si | 0.98 |
| IENF_Br | 0.93 |
|
| 0.99 |
| IENF_FSi | 0.99 |
| IENF_FBr | 0.97 |
|
| 0.99 |
ENF epidermal nerve fiber GS-EFNS: gold standard method according to EFNS, ICC itra-class correlation, IENF intra-epidermal nerve fiber, IENF_Si intra-epidermal nerve fiber crossing dermal-epidermal junction as single fiber, IENF_Br intra-epidermal nerve fiber crossing dermal-epidermal junction as fiber showing branching, IENF_F ierve fiber fragment lying free in epidermis, IENF_FSi ierve fiber fragment lying free in epidermis as single fragment, IENF_FBr nerve fiber fragment lying free in epidermis showing branching, LDT laboratory developed test, SFN small fiber neuropathy