Literature DB >> 27214642

An Empirical IR Frequency Map for Ester C═O Stretching Vibrations.

Sean C Edington1, Jennifer C Flanagan1, Carlos R Baiz1.   

Abstract

We present an approach for parametrizing spectroscopic maps of carbonyl groups against experimental IR absorption spectra. The model correlates electric fields sampled from molecular dynamics simulations with vibrational frequencies and line shapes in different solvents. We perform an exhaustive search of parameter combinations and optimize the parameter values for the ester carbonyl stretching mode in ethyl acetate by comparing to experimental FTIR spectra of the small molecule in eight different solvents of varying polarities. Hydrogen-bonding solvents require that the peaks are fit independently for each hydrogen bond ensemble to compensate for improper sampling in molecular dynamics simulations. Spectra simulated using the optimized electrostatic map reproduce C═O IR absorption spectra of ethyl acetate with a line center RMSD error of 4.9 cm(-1) over 12 different solvents whose measured line centers span a 45 cm(-1) range. In combination with molecular dynamics simulations, this spectroscopic map will be useful in interpreting spectra of ester groups in heterogeneous environments such as lipid membranes.

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Year:  2016        PMID: 27214642     DOI: 10.1021/acs.jpca.6b02887

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Calcium-Lipid Interactions Observed with Isotope-Edited Infrared Spectroscopy.

Authors:  Mason L Valentine; Alfredo E Cardenas; Ron Elber; Carlos R Baiz
Journal:  Biophys J       Date:  2020-04-21       Impact factor: 4.033

3.  Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Authors:  Samuel H Schneider; Huong T Kratochvil; Martin T Zanni; Steven G Boxer
Journal:  J Phys Chem B       Date:  2017-03-08       Impact factor: 2.991

4.  Site-Specific Peptide Probes Detect Buried Water in a Lipid Membrane.

Authors:  Jennifer C Flanagan; Carlos R Baiz
Journal:  Biophys J       Date:  2019-03-19       Impact factor: 4.033

5.  Development of Vibrational Frequency Maps for Nucleobases.

Authors:  Yaoyukun Jiang; Lu Wang
Journal:  J Phys Chem B       Date:  2019-07-01       Impact factor: 2.991

6.  Interfacial dynamics in inverted-headgroup lipid membranes.

Authors:  Euihyun Lee; Xiao You; Carlos R Baiz
Journal:  J Chem Phys       Date:  2022-02-21       Impact factor: 3.488

7.  Origin of thiocyanate spectral shifts in water and organic solvents.

Authors:  Ruoqi Zhao; Joseph C Shirley; Euihyun Lee; Adam Grofe; Hui Li; Carlos R Baiz; Jiali Gao
Journal:  J Chem Phys       Date:  2022-03-14       Impact factor: 3.488

8.  Ultrafast Dynamics at Lipid-Water Interfaces.

Authors:  Jennifer C Flanagan; Mason L Valentine; Carlos R Baiz
Journal:  Acc Chem Res       Date:  2020-08-31       Impact factor: 22.384

9.  Hydration and Orientation of Carbonyl Groups in Oppositely Charged Lipid Monolayers on Water.

Authors:  L B Dreier; M Bonn; E H G Backus
Journal:  J Phys Chem B       Date:  2019-01-23       Impact factor: 2.991

10.  Cu(II)-Hydrazide Coordination Compound Supported on Silica Gel as an Efficient and Recyclable Heterogeneous Catalyst for Green Click Synthesis of β-Hydroxy-1,2,3-triazoles in Water.

Authors:  Marzieh Emami; Rahman Bikas; Nader Noshiranzadeh; Anna Kozakiewicz; Tadeusz Lis
Journal:  ACS Omega       Date:  2020-05-26
  10 in total

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