Literature DB >> 27208237

X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture.

Eric D Rogers1, Daria Monaenkova1, Medhavinee Mijar1, Apoorva Nori1, Daniel I Goldman1, Philip N Benfey2.   

Abstract

Root system architecture (RSA) impacts plant fitness and crop yield by facilitating efficient nutrient and water uptake from the soil. A better understanding of the effects of soil on RSA could improve crop productivity by matching roots to their soil environment. We used x-ray computed tomography to perform a detailed three-dimensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties of a granular substrate. We characterized the RSA of eight rice cultivars in five different growth substrates and determined that RSA is the result of interactions between genotype and growth environment. We identified cultivar-specific changes in RSA in response to changing growth substrate texture. The cultivar Azucena exhibited low RSA plasticity in all growth substrates, whereas cultivar Bala root depth was a function of soil hardness. Our imaging techniques provide a framework to study RSA in different growth environments, the results of which can be used to improve root traits with agronomic potential.
© 2016 American Society of Plant Biologists. All Rights Reserved.

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Year:  2016        PMID: 27208237      PMCID: PMC4936573          DOI: 10.1104/pp.16.00397

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  35 in total

1.  Wheat grain yield on saline soils is improved by an ancestral Na⁺ transporter gene.

Authors:  Rana Munns; Richard A James; Bo Xu; Asmini Athman; Simon J Conn; Charlotte Jordans; Caitlin S Byrt; Ray A Hare; Stephen D Tyerman; Mark Tester; Darren Plett; Matthew Gilliham
Journal:  Nat Biotechnol       Date:  2012-03-11       Impact factor: 54.908

2.  An X-ray micro-tomography system optimised for the low-dose study of living organisms.

Authors:  P M Jenneson; W B Gilboy; E J Morton; P J Gregory
Journal:  Appl Radiat Isot       Date:  2003-02       Impact factor: 1.513

3.  Quantitative trait loci for root-penetration ability and root thickness in rice: comparison of genetic backgrounds.

Authors:  H G Zheng; R C Babu; M S Pathan; L Ali; N Huang; B Courtois; H T Nguyen
Journal:  Genome       Date:  2000-02       Impact factor: 2.166

4.  Cell identity regulators link development and stress responses in the Arabidopsis root.

Authors:  Anjali S Iyer-Pascuzzi; Terry Jackson; Hongchang Cui; Jalean J Petricka; Wolfgang Busch; Hironaka Tsukagoshi; Philip N Benfey
Journal:  Dev Cell       Date:  2011-10-18       Impact factor: 12.270

5.  From lab to field, new approaches to phenotyping root system architecture.

Authors:  Jinming Zhu; Paul A Ingram; Philip N Benfey; Tedd Elich
Journal:  Curr Opin Plant Biol       Date:  2011-04-27       Impact factor: 7.834

6.  Genotypic recognition and spatial responses by rice roots.

Authors:  Suqin Fang; Randy T Clark; Ying Zheng; Anjali S Iyer-Pascuzzi; Joshua S Weitz; Leon V Kochian; Herbert Edelsbrunner; Hong Liao; Philip N Benfey
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-29       Impact factor: 11.205

7.  RooTrak: automated recovery of three-dimensional plant root architecture in soil from x-ray microcomputed tomography images using visual tracking.

Authors:  Stefan Mairhofer; Susan Zappala; Saoirse R Tracy; Craig Sturrock; Malcolm Bennett; Sacha J Mooney; Tony Pridmore
Journal:  Plant Physiol       Date:  2011-12-21       Impact factor: 8.340

8.  Three-dimensional root phenotyping with a novel imaging and software platform.

Authors:  Randy T Clark; Robert B MacCurdy; Janelle K Jung; Jon E Shaff; Susan R McCouch; Daniel J Aneshansley; Leon V Kochian
Journal:  Plant Physiol       Date:  2011-03-31       Impact factor: 8.340

9.  GiA Roots: software for the high throughput analysis of plant root system architecture.

Authors:  Taras Galkovskyi; Yuriy Mileyko; Alexander Bucksch; Brad Moore; Olga Symonova; Charles A Price; Christopher N Topp; Anjali S Iyer-Pascuzzi; Paul R Zurek; Suqin Fang; John Harer; Philip N Benfey; Joshua S Weitz
Journal:  BMC Plant Biol       Date:  2012-07-26       Impact factor: 4.215

10.  Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography.

Authors:  Stefan Mairhofer; Susan Zappala; Saoirse Tracy; Craig Sturrock; Malcolm John Bennett; Sacha Jon Mooney; Tony Paul Pridmore
Journal:  Plant Methods       Date:  2013-03-20       Impact factor: 4.993

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  18 in total

1.  An Optimized Rhizobox Protocol to Visualize Root Growth and Responsiveness to Localized Nutrients.

Authors:  Jennifer E Schmidt; Carolyn Lowry; Amelie C M Gaudin
Journal:  J Vis Exp       Date:  2018-10-22       Impact factor: 1.355

2.  Three-Dimensional Time-Lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures.

Authors:  Ni Jiang; Eric Floro; Adam L Bray; Benjamin Laws; Keith E Duncan; Christopher N Topp
Journal:  Plant Cell       Date:  2019-05-23       Impact factor: 11.277

Review 3.  Recent trends in root phenomics of plant systems with available methods- discrepancies and consonances.

Authors:  Mohammad Urfan; Shubham Sharma; Haroon Rashid Hakla; Prakriti Rajput; Sonali Andotra; Praveen K Lehana; Renu Bhardwaj; M Suhail Khan; Ranjan Das; Sunil Kumar; Sikander Pal
Journal:  Physiol Mol Biol Plants       Date:  2022-07-20

Review 4.  A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements.

Authors:  Grégoire T Freschet; Loïc Pagès; Colleen M Iversen; Louise H Comas; Boris Rewald; Catherine Roumet; Jitka Klimešová; Marcin Zadworny; Hendrik Poorter; Johannes A Postma; Thomas S Adams; Agnieszka Bagniewska-Zadworna; A Glyn Bengough; Elison B Blancaflor; Ivano Brunner; Johannes H C Cornelissen; Eric Garnier; Arthur Gessler; Sarah E Hobbie; Ina C Meier; Liesje Mommer; Catherine Picon-Cochard; Laura Rose; Peter Ryser; Michael Scherer-Lorenzen; Nadejda A Soudzilovskaia; Alexia Stokes; Tao Sun; Oscar J Valverde-Barrantes; Monique Weemstra; Alexandra Weigelt; Nina Wurzburger; Larry M York; Sarah A Batterman; Moemy Gomes de Moraes; Štěpán Janeček; Hans Lambers; Verity Salmon; Nishanth Tharayil; M Luke McCormack
Journal:  New Phytol       Date:  2021-11       Impact factor: 10.323

Review 5.  Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.

Authors:  Xi Zhang; Yi Man; Xiaohong Zhuang; Jinbo Shen; Yi Zhang; Yaning Cui; Meng Yu; Jingjing Xing; Guangchao Wang; Na Lian; Zijian Hu; Lingyu Ma; Weiwei Shen; Shunyao Yang; Huimin Xu; Jiahui Bian; Yanping Jing; Xiaojuan Li; Ruili Li; Tonglin Mao; Yuling Jiao; Haiyun Ren; Jinxing Lin
Journal:  Sci China Life Sci       Date:  2021-03-12       Impact factor: 6.038

6.  Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought.

Authors:  Alexandre Grondin; Shalabh Dixit; Rolando Torres; Challa Venkateshwarlu; Eric Rogers; Thomas Mitchell-Olds; Philip N Benfey; Arvind Kumar; Amelia Henry
Journal:  Rice (N Y)       Date:  2018-07-31       Impact factor: 4.783

7.  Comprehensive 3D phenotyping reveals continuous morphological variation across genetically diverse sorghum inflorescences.

Authors:  Mao Li; Mon-Ray Shao; Dan Zeng; Tao Ju; Elizabeth A Kellogg; Christopher N Topp
Journal:  New Phytol       Date:  2020-04-16       Impact factor: 10.151

8.  High-throughput three-dimensional visualization of root system architecture of rice using X-ray computed tomography.

Authors:  Takanari Tanabata; Yusaku Uga; Shota Teramoto; Satoko Takayasu; Yuka Kitomi; Yumiko Arai-Sanoh
Journal:  Plant Methods       Date:  2020-05-11       Impact factor: 4.993

9.  An automated, cost-effective and scalable, flood-and-drain based root phenotyping system for cereals.

Authors:  Michal Slota; Miroslaw Maluszynski; Iwona Szarejko
Journal:  Plant Methods       Date:  2016-06-24       Impact factor: 4.993

10.  Interaction between contrasting rice genotypes and soil physical conditions induced by hydraulic stresses typical of alternate wetting and drying irrigation of soil.

Authors:  Huan Fang; Hu Zhou; Gareth J Norton; Adam H Price; Annette C Raffan; Sacha J Mooney; Xinhua Peng; Paul D Hallett
Journal:  Plant Soil       Date:  2018-06-29       Impact factor: 4.192

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