| Literature DB >> 27195301 |
Hiroki Shima1, Akiko Inagaki2, Takehiro Imura3, Youhei Yamagata4, Kimiko Watanabe5, Kazuhiko Igarashi6, Masafumi Goto2, Kazutaka Murayama7.
Abstract
The clostridial collagenases, H and G, play key roles in pancreatic islet isolation. Collagenases digest the peptide bond between Yaa and the subsequent Gly in Gly-Xaa-Yaa repeats. To fully understand the pancreatic islet isolation process, identification of the collagenase substrates in the tissue is very important. Although collagen types I and III were reported as possible substrates for collagenase H, the substrate for collagenase G remains unknown. In this study, collagen type V was focused upon as the target for collagenases. In vitro digestion experiments for collagen type V were performed and analyzed by SDS-PAGE and mass spectrometry. Porcine pancreatic tissues were digested in vitro under three conditions and observed during digestion. The results revealed that collagen type V was only digested by collagenase G and that the digestion was initiated from the N-terminal part. Tissue degradation during porcine islet isolation was only observed in the presence of both collagenases H and G. These findings suggest that collagen type V is one of the substrates for collagenase G. The enzymatic activity of collagenase G appears to be more important for pancreatic islet isolation in large mammals such as pigs and humans.Entities:
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Year: 2016 PMID: 27195301 PMCID: PMC4852369 DOI: 10.1155/2016/4396756
Source DB: PubMed Journal: J Diabetes Res Impact factor: 4.011
Figure 1Schematic diagram of the domain architectures of ColG and ColH. Act: activator domain; Pep: peptidase domain; PKD: polycystic kidney disease-like domain; CBD: collagen-binding domain. The collagenase module is composed of two functional domains, an activator domain and a peptidase domain.
Figure 2In vitro Col-V digestion by ColH and ColG. (a) SDS-PAGE analysis of digested Col-V. (b) MALDI-tof-MS analysis of the digested samples at 15, 30, and 60 min. The peak intensities are scaled to 100% for the most intense peak in each chart.
Peptide numbers detected by ESI-MS.
| # pep | # tryp | # semitryp | # nontryp | % col. pep | ||||
|---|---|---|---|---|---|---|---|---|
| Gxx-G | non-Gxx-G | Gxx-G | non-Gxx-G | |||||
| V |
| 29, 31 | 20, 33 | 1, 2 | 8, 6 | 0, 0 | 0, 0 | 3, 6 |
|
| 45, 38 | 30, 25 | 4, 6 | 11, 7 | 0, 0 | 0, 0 | 9, 16 | |
|
| 17, 17 | 15, 15 | 0, 0 | 2, 2 | 0, 0 | 0, 0 | 0, 0 | |
|
| ||||||||
| V + H |
| 39, 33 | 21, 20 | 9, 6 | 4, 6 | 3, 0 | 0, 0 | 31, 27 |
|
| 46, 47 | 26, 30 | 9, 7 | 10, 9 | 1, 1 | 0, 0 | 22, 17 | |
|
| 21, 18 | 15, 16 | 4, 1 | 2, 1 | 0, 0 | 0, 0 | 19, 6 | |
|
| ||||||||
| V + G |
| 64, 56 | 17, 15 | 17, 16 | 8, 5 | 22, 20 | 0, 0 | 61, 64 |
|
| 71, 62 | 22, 19 | 28, 26 | 7, 2 | 14, 15 | 0, 0 | 59, 66 | |
|
| 34, 24 | 10, 7 | 12, 9 | 1, 1 | 11, 7 | 0, 0 | 68, 67 | |
# pep, # tryp, # semitryp, and # nontryp indicate the number of total peptides, number of tryptic peptides (R/K)↓xxx⋯xxx(R/K)↓xxx⋯, number of semitryptic peptides (R/K)↓xxx⋯ or ⋯xxx(R/K)↓xxx⋯, and number of nontryptic peptides, respectively.
Gxx-G is the preferred substrate sequence for collagenase at position P3-P2-P1-P1′.
Type V collagen was digested by trypsin (V), trypsin + collagenase H (V + H), and trypsin + collagenase G (V + G).
The percentage of collagenolytic peptides was calculated by the following equation: % col. pep = (number of semitryptic Gxx-G + number of nontryptic Gxx-G)/(number of total peptides).
Figure 3SDS-PAGE analysis of Col-V digestion by ColG within 15 min.
Figure 4SDS-PAGE analysis of Col-V digestion by ColG over a long time period (~4 h). (a) SDS-PAGE analysis of Col-V digestions. ColG and the main bands are numbered. (b) Band intensity analysis by densitometry.
Figure 5In vitro porcine pancreatic tissue digestions by proteases. The digestions were observed at 0, 3, 6, and 9 h. Each digestion was conducted in triplicate.
Collagen peptide identification from tissue digestion samples.
| Col type | # tryp + # semitryp | # nontryp | # Gxx-G | |
|---|---|---|---|---|
| Col-V |
| 2, 0 | 0 | 2 |
|
| 4, 0 | 0 | 3 | |
|
| ||||
| Col-IV |
| 1, 2 | 3 | 2 |
|
| 1, 1 | 1 | 1 | |
|
| ||||
| Col-VI |
| 5, 8 | 0 | 0 |
|
| 9, 1 | 1 | 0 | |
|
| 3, 2 | 1 | 0 | |
# tryp, # semitryp, and # nontryp indicate the number of tryptic peptides (R/K)↓xxx⋯xxx(R/K)↓xxx⋯, number of semitryptic peptides (R/K)↓xxx⋯ or ⋯xxx(R/K)↓xxx⋯, and number of nontryptic peptides, respectively.
The total number of detected peptides is shown by # tryp + # semitryp + # nontryp.
# Gxx-G can be shared in # tryp, # semitryp, and # nontryp.
Database searches for porcine collagens were based on the following NCBI accession numbers: α1(V): 62461592; α2(V): 157427707; α1(IV): 927191681; α2(IV): 927191683; α1(VI): 92020086, 92020094, and 545895133; α2(VI): 927203606; α3(VI): 92020131 and 927211912.